Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PMA4326_RS16720 Genome accession   NZ_CP047260
Coordinates   3656039..3658255 (-) Length   738 a.a.
NCBI ID   WP_054080088.1    Uniprot ID   A0A8T8C3H1
Organism   Pseudomonas syringae pv. maculicola str. ES4326     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3651039..3663255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMA4326_RS16690 (PMA4326_016690) murB 3651839..3652858 (-) 1020 WP_007253403.1 UDP-N-acetylmuramate dehydrogenase -
  PMA4326_RS16695 (PMA4326_016695) kdsB 3652893..3653657 (-) 765 WP_007253404.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PMA4326_RS16700 (PMA4326_016700) - 3653654..3653839 (-) 186 WP_007253405.1 Trm112 family protein -
  PMA4326_RS16705 (PMA4326_016705) lpxK 3653857..3654852 (-) 996 WP_007253406.1 tetraacyldisaccharide 4'-kinase -
  PMA4326_RS16710 (PMA4326_016710) - 3654852..3655283 (-) 432 WP_007253407.1 biopolymer transporter ExbD -
  PMA4326_RS16715 (PMA4326_016715) exbB 3655280..3655996 (-) 717 WP_080394009.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PMA4326_RS16720 (PMA4326_016720) comA 3656039..3658255 (-) 2217 WP_054080088.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PMA4326_RS16725 (PMA4326_016725) - 3658483..3660510 (+) 2028 WP_054080089.1 type VI secretion system tip protein VgrG -
  PMA4326_RS16730 (PMA4326_016730) - 3660507..3661358 (+) 852 WP_007253412.1 DUF4123 domain-containing protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80484.65 Da        Isoelectric Point: 10.4335

>NTDB_id=411900 PMA4326_RS16720 WP_054080088.1 3656039..3658255(-) (comA) [Pseudomonas syringae pv. maculicola str. ES4326]
MRTGMIALALGLVALRFLPALPPTWLLLLMPVVALMLLPFRTYPVALFLLGFTWACVSAQWALNDRLSQRLDGQTLWVQG
KVVGLPSVAEGVVRFELEDARSRRATLPALIRVAWYGGPEIRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVADGQLLAPARGAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSRTDWQVLQDTGTVHLLVISGQHIGLLAGVVYAL
VAGLARWGVWPRALPWLPSACVLAFGAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNTVLIFEPL
VTLQPGFWLSFAAVGILLLIFSGRLGAWRWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLVAVPWVSVIVLPPAL
LGTLLLPVPLLGEGLLWLAGGALEWLFMFLDRVAAVLPAWLPSAVPGWAWGLSFLGGLLLLLPRGVPMRPLGWPLLLLCV
FPPLEEVPDGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAIRKAGVRRLDLMLISHADADHAGGA
LAVHQAFPVKRVLGGERAKLAPQLNAALCESGERWEWDGVVFSTWRWEQAPDGNAASCILSVDAGGERLLLAGDIDVHAE
RAAMDSGFDLRAHWLQSPHHGSRSSSSKPFLQAVAPVGVLISRGRNNAFGHPHPRVMARYRWLGIASYDSAELGAISLQL
GTFGPPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=411900 PMA4326_RS16720 WP_054080088.1 3656039..3658255(-) (comA) [Pseudomonas syringae pv. maculicola str. ES4326]
ATGCGCACAGGGATGATCGCGCTCGCGCTGGGGCTGGTTGCCTTGCGTTTTCTGCCTGCCTTGCCGCCGACCTGGCTGTT
GCTGCTGATGCCGGTGGTGGCATTGATGCTGCTGCCGTTTCGCACCTATCCAGTGGCGCTGTTTCTGCTCGGCTTCACAT
GGGCGTGCGTTTCGGCGCAGTGGGCATTGAATGATCGTCTGTCGCAGCGGCTGGACGGGCAGACGTTGTGGGTGCAAGGC
AAGGTGGTCGGGCTGCCGAGTGTCGCCGAGGGCGTGGTGCGTTTCGAGCTGGAGGACGCCCGCTCACGGCGGGCGACGTT
ACCTGCGCTGATTCGAGTGGCCTGGTATGGCGGTCCCGAGATACGCAGTGGCGAGCGCTGGCGTCTGGCGGTCAAACTCA
AGCGTCCTGGCGGGCTGGTCAATCCGGATGCCTTCGATTATCAGGCCTGGTTGCTGGCGCAGCGTATCGGTGCGACCGGC
ACTGTGGCAGACGGCCAACTGCTGGCCCCGGCGCGTGGGGCGTGGCGCGACGGCATTCGACAGCGGTTGCTGGCGGTCGA
TGCGCAGGGCCGGGAAGGCGGGCTGGCCGCGTTAGTGCTGGGCGATGGCTCGGGTTTGTCGCGCACCGACTGGCAGGTGC
TGCAAGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGTCAGCACATTGGCTTGCTCGCCGGGGTGGTCTATGCGCTG
GTTGCCGGCCTGGCGCGTTGGGGAGTTTGGCCGCGAGCGTTGCCCTGGCTACCCAGTGCTTGCGTCCTGGCGTTTGGCGC
GGCGTTGGGTTACGGGCTGCTGGCCGGTTTCGAAGTGCCAGTGCGGCGCGCCTGTGTGATGGTCGCCATGGTGCTGCTCT
GGCGTCTGCGTTTTCGGCATCTGGGGGTGGTCTGGCCGTTGCTGCTGTCATTTAACACGGTGCTGATCTTCGAGCCGCTG
GTCACGTTGCAACCGGGCTTCTGGTTGTCATTCGCGGCAGTCGGCATTCTGCTACTTATTTTCAGCGGCCGGCTGGGCGC
CTGGCGCTGGTGGCAGAGCTGGACGCGTGCGCAATGGTTGATCGCTATCGGGCTGCTGCCGATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGTCCGTTTGCCAACCTTGTCGCTGTGCCATGGGTCAGCGTGATCGTTCTGCCGCCCGCATTG
CTCGGGACGCTGCTGTTGCCGGTCCCGCTTTTGGGTGAAGGGCTGTTATGGCTGGCCGGAGGTGCGCTGGAATGGCTGTT
CATGTTTCTCGACCGGGTCGCCGCAGTGCTGCCTGCCTGGTTGCCCAGTGCCGTGCCGGGTTGGGCCTGGGGGTTGAGTT
TTTTGGGGGGCTTGTTGTTATTGCTGCCCAGAGGCGTGCCGATGCGTCCGCTGGGTTGGCCGCTGCTGCTGTTGTGCGTG
TTCCCGCCGCTTGAGGAAGTGCCAGACGGGCAGGTTGAAGTCCTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGTT
GCGTACGCGCAACCACACCCTGTTGTATGACGCCGGGCCGCGCTTCGGCGAGTTCGATATCGGTCAGCGTGTGGTCGTGC
CTGCCATCCGCAAAGCCGGTGTCCGTCGCCTTGATCTGATGCTGATTAGCCATGCCGATGCGGATCACGCCGGTGGTGCC
CTGGCGGTTCATCAGGCCTTCCCGGTGAAGCGGGTGCTGGGCGGTGAGCGGGCCAAGCTCGCCCCGCAACTCAATGCGGC
GCTGTGCGAAAGCGGCGAGCGCTGGGAATGGGATGGCGTGGTTTTCAGCACCTGGCGCTGGGAACAGGCTCCCGATGGTA
ATGCGGCCTCCTGCATCCTGAGCGTCGACGCGGGTGGCGAGCGCCTGCTGCTGGCGGGCGACATCGATGTTCATGCCGAG
CGTGCGGCCATGGACAGTGGCTTCGATCTGCGCGCTCACTGGTTGCAGTCCCCGCACCATGGCAGTCGGTCATCTTCATC
GAAACCCTTTCTTCAGGCTGTCGCGCCCGTCGGCGTGTTGATCTCCCGAGGGCGTAACAATGCGTTCGGGCATCCGCACC
CGCGGGTCATGGCGCGTTACCGATGGCTGGGCATAGCGAGTTACGACAGCGCTGAACTGGGTGCCATCAGTCTGCAACTG
GGCACATTCGGTCCGCCCCGTGCAGAGCGTGCGCAGCGGCGTTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.128

97.019

0.612
  comA Ralstonia pseudosolanacearum GMI1000

34.164

100

0.39

Multiple sequence alignment