Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PMA4326_RS16715 Genome accession   NZ_CP047260
Coordinates   3655280..3655996 (-) Length   238 a.a.
NCBI ID   WP_080394009.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. maculicola str. ES4326     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3650280..3660996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMA4326_RS16690 (PMA4326_016690) murB 3651839..3652858 (-) 1020 WP_007253403.1 UDP-N-acetylmuramate dehydrogenase -
  PMA4326_RS16695 (PMA4326_016695) kdsB 3652893..3653657 (-) 765 WP_007253404.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PMA4326_RS16700 (PMA4326_016700) - 3653654..3653839 (-) 186 WP_007253405.1 Trm112 family protein -
  PMA4326_RS16705 (PMA4326_016705) lpxK 3653857..3654852 (-) 996 WP_007253406.1 tetraacyldisaccharide 4'-kinase -
  PMA4326_RS16710 (PMA4326_016710) - 3654852..3655283 (-) 432 WP_007253407.1 biopolymer transporter ExbD -
  PMA4326_RS16715 (PMA4326_016715) exbB 3655280..3655996 (-) 717 WP_080394009.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PMA4326_RS16720 (PMA4326_016720) comA 3656039..3658255 (-) 2217 WP_054080088.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PMA4326_RS16725 (PMA4326_016725) - 3658483..3660510 (+) 2028 WP_054080089.1 type VI secretion system tip protein VgrG -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25766.21 Da        Isoelectric Point: 7.3259

>NTDB_id=411899 PMA4326_RS16715 WP_080394009.1 3655280..3655996(-) (exbB) [Pseudomonas syringae pv. maculicola str. ES4326]
MVEWRQFFDGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQENKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSSGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLAKAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=411899 PMA4326_RS16715 WP_080394009.1 3655280..3655996(-) (exbB) [Pseudomonas syringae pv. maculicola str. ES4326]
ATGGTAGAGTGGCGCCAATTTTTCGATGGAGTGATCACTGTGTGGGAACTGGTCAAGTCTGGCGGCTGGATGATGCTGCC
GATCATTTTGAGTTCCATTGCCGCTGCCGGCATCATCATCGAGCGTTTATGGACGCTGCGGGCCAGCCGGATCGCCCCGC
CGCATCTGTTGGGACAGGCCTGGCAGTGGATTCAGGAAAACAAGCTCGACAGCGAAAAGCTCAAGCAACTGCGCGCCGAT
TCACCCTTGGGTGAAATCCTCGCCGCAGGTCTGGCGAACTCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGA
AGCCGCCGCCCGTGTCATTCATGACCTGGAGCGCTACCTGAGCGCGCTGGGCTCGATTGCTGCCATGGCGCCACTGCTCG
GCCTGCTCGGTACAGTGCTGGGTATGATCGAAATTTTCGGCTCGTTCAACAGTTCCGGCGCGACCGCCAATGCCGGCGTG
CTGGCAAGCGGCATTTCCAAGGCGCTGATTTGTACCGCATCAGGCCTGATCGTCGCGATCCCGGCCATCTTCTTTCATCG
CTTTCTGCAAAGCCGTGTCGACGAGCTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAGGTTGATCTCAAGTCGCTCGCCAAAGCGGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

77.619

88.235

0.685

Multiple sequence alignment