Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PMA4326_RS02985 Genome accession   NZ_CP047260
Coordinates   648041..649381 (-) Length   446 a.a.
NCBI ID   WP_007253450.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. maculicola str. ES4326     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 643041..654381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMA4326_RS02975 (PMA4326_002975) - 646047..647162 (-) 1116 WP_007253452.1 efflux RND transporter periplasmic adaptor subunit -
  PMA4326_RS02980 (PMA4326_002980) - 647244..647861 (-) 618 WP_007253451.1 TetR/AcrR family transcriptional regulator -
  PMA4326_RS02985 (PMA4326_002985) pilR 648041..649381 (-) 1341 WP_007253450.1 sigma-54 dependent transcriptional regulator Regulator
  PMA4326_RS02990 (PMA4326_002990) pilS 649384..650976 (-) 1593 WP_007253449.1 ATP-binding protein Regulator
  PMA4326_RS02995 (PMA4326_002995) - 650966..651205 (-) 240 WP_054998717.1 PP0621 family protein -
  PMA4326_RS03000 (PMA4326_003000) - 651335..652357 (-) 1023 WP_007253447.1 outer membrane protein assembly factor BamD -
  PMA4326_RS03005 (PMA4326_003005) rluD 652507..653469 (+) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PMA4326_RS03010 (PMA4326_003010) pgeF 653466..654194 (+) 729 WP_007253446.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50127.19 Da        Isoelectric Point: 6.5081

>NTDB_id=411887 PMA4326_RS02985 WP_007253450.1 648041..649381(-) (pilR) [Pseudomonas syringae pv. maculicola str. ES4326]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHEWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPQVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSSVQPVRSIDSRLLGDSPPMRTLRTQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSIGGQQEQVVDVRILCATHKDLSAEVVAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLQRLAGKDAQPVARLHAQALETLKNYRFPGNVRELENMLERAYTLCENDEIHASDLRLAECSSPQEHHGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=411887 PMA4326_RS02985 WP_007253450.1 648041..649381(-) (pilR) [Pseudomonas syringae pv. maculicola str. ES4326]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGACGATGAGCCGGATATTCGTGAACTCCTGGAAATCACCCTGGGGCGCAT
GAAGCTCGACACTCGCAGCGCCCGCAATGTCGCCGAGGCGCATGAATGGCTGGCGCGCGAGCCGTTCGACATGTGCCTGA
CCGACATGCGCCTGCCTGACGGCAACGGCCTTGAACTGGTGCAGCATATCCAGCACGGTTATCCGCAAGTGCCGGTGGCA
ATGATCACCGCGCATGGCAACCTGGACACCGCGATTCATGCGCTAAAAGCCGGGGCGTTCGATTTCGTGACCAAGCCGGT
TGACCTCAACCGCCTGCGCGAGCTGGTCAACAGCGCGCTGAGCCTGCCCTCCAGCGTGCAACCGGTGCGCAGCATCGACA
GCCGCCTGCTCGGCGATTCGCCGCCGATGCGCACGTTGCGTACCCAGATCGGCAAGCTGGCGCGCAGTCAGGCGCCGATC
TACATCAGCGGTGAATCCGGCAGCGGCAAAGAACTGGTGGCGCGCTTGATCCACGAGCAGGGGCCGCGGAGTGAAAAGCC
GTTCGTGCCAGTCAATTGCGGGGCGATTCCTTCCGAATTGATGGAAAGCGAGTTCTTCGGCCACCGCAAAGGCAGCTTCA
GCGGCGCCCATGAAGACAAGCCGGGCCTGTTTCAGGCGGCGCATAACGGCACGTTGTTTCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGGGCGATTCAGGAAAAATCTATTCGCAGCATCGGCGGTCAGCAGGAACAGGT
GGTCGACGTGCGCATTCTCTGCGCCACCCATAAGGACCTCAGCGCCGAAGTGGTCGCCGGGCGTTTCCGTCAGGATTTGT
ATTACCGGTTGAACGTGATCGAACTGCGCGTCCCCTCATTGCGCGAGCGCCGTGAGGATATCGACCAACTGGCCGCCAGC
GTTCTGCAGCGTCTGGCGGGCAAGGATGCGCAACCGGTTGCGCGTTTGCATGCACAGGCACTGGAAACCCTGAAAAACTA
TCGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAACGCGCTTACACCCTCTGCGAAAACGACGAAATCCACG
CCAGCGACCTGCGTCTGGCCGAATGCTCCAGCCCGCAGGAACACCACGGCGCAAACCTGGCCGATATCGACAATCTGGAA
GATTACCTGGAAAGCATCGAGCGCAAACTGATCCTGCAAGCCCTCGAAGAAACCCGCTGGAACCGCACCGCCGCCGCAGA
ACGGCTCAGCTTGTCGTTCCGCTCGTTGCGTTACCGGTTGAAAAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.781

99.327

0.783
  pilR Acinetobacter baumannii strain A118

48.922

100

0.509
  luxO Vibrio cholerae strain A1552

37.303

99.776

0.372

Multiple sequence alignment