Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GRT08_RS11950 Genome accession   NZ_CP047234
Coordinates   2469093..2469428 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2464093..2474428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS11930 (GRT08_11760) gcvT 2464703..2465803 (-) 1101 WP_071391617.1 glycine cleavage system aminomethyltransferase GcvT -
  GRT08_RS11935 (GRT08_11765) - 2466227..2467897 (+) 1671 WP_046559872.1 DEAD/DEAH box helicase -
  GRT08_RS11940 (GRT08_11770) - 2467915..2468709 (+) 795 WP_071391615.1 YqhG family protein -
  GRT08_RS11945 (GRT08_11775) sinI 2468886..2469059 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  GRT08_RS11950 (GRT08_11780) sinR 2469093..2469428 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  GRT08_RS11955 (GRT08_11785) tasA 2469476..2470261 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  GRT08_RS11960 (GRT08_11790) sipW 2470325..2470909 (-) 585 WP_060562614.1 signal peptidase I SipW -
  GRT08_RS11965 (GRT08_11795) tapA 2470881..2471552 (-) 672 WP_071391613.1 amyloid fiber anchoring/assembly protein TapA -
  GRT08_RS11970 (GRT08_11800) - 2471811..2472140 (+) 330 WP_071391612.1 DUF3889 domain-containing protein -
  GRT08_RS11975 (GRT08_11805) - 2472180..2472359 (-) 180 WP_003153093.1 YqzE family protein -
  GRT08_RS11980 (GRT08_11810) comGG 2472416..2472793 (-) 378 WP_071391611.1 competence type IV pilus minor pilin ComGG Machinery gene
  GRT08_RS11985 (GRT08_11815) comGF 2472794..2473189 (-) 396 WP_071391610.1 competence type IV pilus minor pilin ComGF -
  GRT08_RS11990 (GRT08_11820) comGE 2473203..2473517 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  GRT08_RS11995 (GRT08_11825) comGD 2473501..2473938 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  GRT08_RS12000 (GRT08_11830) comGC 2473928..2474236 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=411686 GRT08_RS11950 WP_003153104.1 2469093..2469428(+) (sinR) [Bacillus amyloliquefaciens strain FJ4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=411686 GRT08_RS11950 WP_003153104.1 2469093..2469428(+) (sinR) [Bacillus amyloliquefaciens strain FJ4]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment