Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GRT08_RS11760 Genome accession   NZ_CP047234
Coordinates   2434927..2435727 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus amyloliquefaciens strain FJ4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2429927..2440727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRT08_RS11730 (GRT08_11565) - 2430472..2431104 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  GRT08_RS11735 - 2431395..2431532 (+) 138 WP_014470646.1 hypothetical protein -
  GRT08_RS11740 (GRT08_11570) - 2431626..2432744 (+) 1119 WP_003153184.1 NADH-dependent flavin oxidoreductase -
  GRT08_RS11745 (GRT08_11575) - 2432871..2433083 (+) 213 WP_003153183.1 spore germination protein -
  GRT08_RS11750 (GRT08_11580) - 2433210..2433422 (+) 213 WP_003153181.1 spore germination protein -
  GRT08_RS11755 (GRT08_11585) alr 2433598..2434779 (+) 1182 WP_071391632.1 alanine racemase -
  GRT08_RS11760 (GRT08_11590) spo0A 2434927..2435727 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  GRT08_RS11765 (GRT08_11595) spoIVB 2436008..2437288 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  GRT08_RS11770 (GRT08_11600) recN 2437452..2439182 (-) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  GRT08_RS11775 (GRT08_11605) ahrC 2439214..2439663 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  GRT08_RS11780 (GRT08_11610) - 2439758..2440603 (-) 846 WP_377802722.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=411683 GRT08_RS11760 WP_003153177.1 2434927..2435727(-) (spo0A) [Bacillus amyloliquefaciens strain FJ4]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=411683 GRT08_RS11760 WP_003153177.1 2434927..2435727(-) (spo0A) [Bacillus amyloliquefaciens strain FJ4]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAATTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment