Detailed information NTG0041152

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VAA_RS12400
• Genome accession: NC_015633
• Coordinates: 2728569..2729450 (+)
• Length: 293 a.a.
• NCBI ID: WP_013857687.1
• Uniprot ID: A0AAW4AAE0
• Organism: Vibrio anguillarum 775
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2723569..2734450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VAA_RS12380 (VAA_00733)	nadC	2723993..2724880 (+)	888	WP_013857682.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VAA_RS12385 (VAA_00732)	pilA	2725139..2725564 (+)	426	WP_040122945.1	pilin	Machinery gene
VAA_RS12390 (VAA_00731)	pilB	2725574..2727261 (+)	1688	Protein_2411	type IV-A pilus assembly ATPase PilB	-
VAA_RS12395 (VAA_00729)	pilC	2727304..2728530 (+)	1227	WP_013857686.1	type II secretion system F family protein	Machinery gene
VAA_RS12400 (VAA_00728)	pilD	2728569..2729450 (+)	882	WP_013857687.1	prepilin peptidase	Machinery gene
VAA_RS12405 (VAA_00727)	coaE	2729441..2730049 (+)	609	WP_013857688.1	dephospho-CoA kinase	-
VAA_RS12410 (VAA_00726)	zapD	2730082..2730822 (+)	741	WP_013857689.1	cell division protein ZapD	-
VAA_RS12415 (VAA_00725)	yacG	2730912..2731109 (+)	198	WP_010319526.1	DNA gyrase inhibitor YacG	-
VAA_RS12420 (VAA_00724)	rplS	2731190..2731543 (-)	354	WP_010319525.1	50S ribosomal protein L19	-
VAA_RS12425 (VAA_00723)	trmD	2731585..2732331 (-)	747	WP_010319524.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VAA_RS12430 (VAA_00722)	rimM	2732359..2732913 (-)	555	WP_013857691.1	ribosome maturation factor RimM	-
VAA_RS12435 (VAA_00721)	rpsP	2732943..2733191 (-)	249	WP_010319522.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32890.17 Da
• Isoelectric Point: 7.2157

>NTDB_id=41152 VAA_RS12400 WP_013857687.1 2728569..2729450(+) (pilD) [Vibrio anguillarum 775]
MEVFIYYPWLFPLFAALFGLIVGSFLNVVIYRLPKIMEREWRQECADCFPEYHIAPPEGQLTLSVPRSSCPHCDTPIRII
DNIPLLSWLFLKGKCSRCQGPISARYPLIELLTASMSFVVASHFGFSYFSLALLFFTFVLIAATFIDFDTMLLPDKLTLP
LLWAGLSLSLMHISPVSLQDAVIGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPIIILMSSVVGI
VFGLIQLRLQKKGIDKAFPFGPYLAIAGWLTLLWGNDIMSWYLGSIMGLSSWG

Nucleotide

• Length: 882 bp

>NTDB_id=41152 VAA_RS12400 WP_013857687.1 2728569..2729450(+) (pilD) [Vibrio anguillarum 775]
ATGGAAGTTTTTATTTATTACCCTTGGCTCTTTCCACTTTTTGCAGCGTTGTTTGGCTTAATCGTGGGGAGTTTTCTCAA
TGTGGTCATTTATCGTCTACCCAAAATCATGGAGCGAGAATGGCGACAAGAGTGCGCTGACTGCTTTCCCGAATATCACA
TTGCGCCACCGGAAGGGCAACTCACGCTCAGTGTCCCTCGTTCTAGCTGCCCACACTGTGATACGCCAATCCGTATTATT
GATAATATTCCGCTACTCAGTTGGCTCTTTCTAAAAGGGAAATGTTCCCGTTGCCAAGGCCCGATCAGTGCACGCTATCC
TTTGATTGAACTGCTCACCGCCAGTATGAGCTTTGTCGTGGCTAGCCACTTCGGTTTTAGTTATTTTTCACTAGCGCTAT
TGTTTTTCACTTTTGTGCTCATCGCGGCGACGTTTATCGATTTCGATACCATGCTGTTACCCGACAAGCTGACACTGCCA
CTACTGTGGGCGGGCCTCAGCTTATCATTGATGCACATTAGCCCAGTCAGTTTGCAAGATGCGGTGATCGGCGCCATTGC
TGGCTATCTGAGCTTATGGTCGGTCTATTGGCTGTTTAAACTCGTCACAGGCAAAGAAGGAATGGGTTATGGCGATTTCA
AACTGCTGGCTGCTCTCGGCGCTTGGTTGGGCTGGCAATATCTGCCCATCATCATTCTCATGTCATCTGTGGTTGGCATT
GTCTTTGGCCTAATTCAATTGCGCTTGCAAAAAAAAGGGATCGACAAAGCCTTTCCTTTTGGCCCCTATCTCGCCATTGC
TGGCTGGCTAACCTTGTTGTGGGGTAACGATATTATGAGTTGGTATTTAGGTTCAATTATGGGGTTATCGTCATGGGGTT
AG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	77.083	98.294	0.758
pilD	Vibrio campbellii strain DS40M4	76.471	98.635	0.754
pilD	Acinetobacter nosocomialis M2	56.458	92.491	0.522
pilD	Acinetobacter baumannii D1279779	56.089	92.491	0.519
pilD	Neisseria gonorrhoeae MS11	46.552	98.976	0.461