Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VAA_RS06330 Genome accession   NC_015633
Coordinates   1346281..1348524 (+) Length   747 a.a.
NCBI ID   WP_029189791.1    Uniprot ID   -
Organism   Vibrio anguillarum 775     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341281..1353524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA_RS06305 (VAA_03206) - 1341759..1342328 (-) 570 WP_013856528.1 hypothetical protein -
  VAA_RS06310 (VAA_03205) lolC 1342494..1343702 (+) 1209 WP_013856529.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  VAA_RS06315 (VAA_03204) lolD 1343695..1344381 (+) 687 WP_013856530.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VAA_RS06320 (VAA_03203) lolE 1344382..1345626 (+) 1245 WP_013856531.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  VAA_RS06325 (VAA_03202) - 1345765..1346274 (-) 510 WP_010319231.1 DUF2062 domain-containing protein -
  VAA_RS06330 (VAA_03201) comEC 1346281..1348524 (+) 2244 WP_029189791.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VAA_RS06335 (VAA_03200) msbA 1348557..1350305 (+) 1749 WP_013856533.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VAA_RS06340 (VAA_03199) lpxK 1350309..1351316 (+) 1008 WP_013856534.1 tetraacyldisaccharide 4'-kinase -
  VAA_RS06345 (VAA_03198) - 1351297..1351476 (+) 180 WP_013856535.1 Trm112 family protein -
  VAA_RS06350 (VAA_03197) kdsB 1351476..1352228 (+) 753 WP_013856536.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VAA_RS06355 (VAA_03196) - 1352271..1352789 (-) 519 WP_013856537.1 cytochrome b -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83533.44 Da        Isoelectric Point: 9.4397

>NTDB_id=41137 VAA_RS06330 WP_029189791.1 1346281..1348524(+) (comEC) [Vibrio anguillarum 775]
MTLLSNYWTLASFSLTAISASYWPWMPDWKWIMPLFAILILSVVYRKLRFLSGVTMALMVIVISGNLLREQSNTIFQTGS
DITINGQVNSFFRQITHGYEGTISIRSINGQTLGIFLRPKVRLIAPLPLKYGDVAEFSITVKPIFGRLNETGFDAEAYSL
SQGIVARATVNNGQSYRIESLPEWRAQWYQKIKTWLADDPNLGILMALTFGERSDISTAQWQALRDSGLIHLVAISGLHI
GIAFGFGYSLGLVLMRLHHRMGWSPFVVGSLCALGYAWLAGFTLPTQRALIMCLLNVAMIVLNVRINTLQRLLMTLSAVL
LIDPFAALSSSFWMSFIAVSVVFYQLSLPQTNRFFLWRLLTMQIGLVLCMLPVTAYFFGGVSTSAALYNLVFIPWFSFVV
VPAIFVALVCTFLTFDGAPMVWHWVAKLLIPVDWSIHYSSLSWFPISGAVLALLSSALLLFVFSPLISRFALAVYSLIVM
VSWLTIPIKTGWRIDVLDVGHGLAVLIEKEGRYVLYDTGASWQGGDHIQATVAPVLNKRGATQLDGLILSHLDNDHAGGR
AEVERVWQPKWKRASQTIAGYQPCIAGEQWQWQQLSFDVIWPPKTVARAYNPHSCVIRIFDQNTGFSVLLPGDVDAMSEW
LLARTEQSLQSHILLVPHHGSRTSSTVALISKVNPEVAIASLAKGGRWQLPSAQVVQRYQQHGANWLDTGEAGQISVIFG
MQNYQVSSLRISRSQAWYRQMLRNEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=41137 VAA_RS06330 WP_029189791.1 1346281..1348524(+) (comEC) [Vibrio anguillarum 775]
ATGACTCTCTTATCTAATTACTGGACCCTAGCTTCGTTTTCGCTAACCGCCATTTCTGCTTCTTATTGGCCTTGGATGCC
AGATTGGAAATGGATTATGCCTCTATTCGCCATTCTTATACTCTCTGTCGTTTATAGAAAACTGCGCTTTCTCTCAGGAG
TAACAATGGCTTTAATGGTCATTGTGATCAGCGGGAACTTATTACGTGAGCAGTCCAACACTATTTTTCAGACAGGTTCG
GATATTACCATAAACGGACAGGTTAACAGCTTTTTTAGACAAATTACTCATGGTTATGAAGGAACAATTTCGATTCGATC
AATCAATGGTCAAACCTTAGGCATTTTTTTGCGGCCCAAGGTGCGATTAATAGCTCCTTTACCGTTGAAGTATGGTGACG
TGGCTGAATTCTCCATCACAGTAAAACCTATCTTTGGTCGGTTAAATGAGACCGGGTTTGATGCAGAGGCGTACTCTTTG
AGCCAAGGTATTGTGGCTCGTGCAACGGTTAATAATGGACAGTCTTATCGCATTGAATCATTACCAGAATGGCGAGCGCA
ATGGTACCAGAAGATCAAAACCTGGCTCGCTGATGATCCCAATCTTGGTATTTTAATGGCGCTTACGTTTGGTGAGCGCA
GTGATATTTCAACGGCACAGTGGCAAGCATTACGAGACAGTGGGCTGATTCATTTGGTTGCCATTTCTGGTCTGCACATT
GGCATCGCGTTTGGTTTTGGTTATAGCCTTGGGCTCGTATTGATGCGTTTGCATCATCGCATGGGGTGGTCGCCATTCGT
CGTAGGAAGCTTGTGCGCACTAGGCTATGCTTGGTTGGCTGGCTTTACCTTGCCCACTCAACGCGCGCTCATCATGTGTT
TGCTCAATGTGGCGATGATTGTTCTCAATGTCCGTATCAATACTTTGCAGCGACTGCTTATGACGTTATCGGCGGTGCTG
CTCATCGATCCTTTTGCTGCGTTATCCAGTAGCTTTTGGATGTCCTTTATTGCTGTCTCAGTGGTGTTCTACCAACTTTC
TCTACCTCAAACTAATCGATTTTTTTTATGGCGTTTATTGACGATGCAGATTGGGTTAGTGCTGTGTATGCTTCCGGTAA
CCGCTTATTTTTTCGGTGGGGTCAGTACCAGTGCGGCGCTCTATAACTTAGTGTTTATTCCTTGGTTCAGTTTTGTGGTG
GTTCCGGCGATCTTTGTGGCTTTAGTCTGTACGTTTTTGACTTTTGATGGCGCACCTATGGTGTGGCATTGGGTGGCCAA
ATTGCTCATTCCAGTTGATTGGTCAATACATTATTCAAGCCTCAGTTGGTTTCCTATTTCTGGGGCTGTTTTGGCTCTGT
TGAGCAGTGCTCTGTTGCTGTTTGTGTTTTCACCGTTGATCTCGCGTTTTGCACTTGCGGTTTACAGCCTCATTGTGATG
GTTTCTTGGCTCACCATTCCGATAAAAACAGGTTGGCGGATTGATGTGTTAGATGTTGGGCATGGGTTAGCGGTGTTGAT
CGAAAAAGAAGGACGCTACGTGCTTTATGATACTGGTGCAAGTTGGCAAGGTGGTGATCACATCCAAGCAACAGTTGCCC
CCGTGTTAAACAAACGGGGAGCTACGCAATTAGACGGGTTGATTTTGAGTCACTTGGATAACGACCATGCAGGTGGAAGA
GCGGAAGTTGAGCGTGTTTGGCAGCCCAAATGGAAACGTGCTAGTCAAACGATAGCGGGTTACCAACCTTGTATTGCTGG
CGAACAATGGCAGTGGCAACAACTCTCTTTTGATGTTATCTGGCCACCAAAAACTGTAGCGCGGGCTTACAATCCTCACT
CTTGTGTGATTCGAATCTTTGACCAAAATACCGGTTTTTCAGTGCTTTTACCCGGGGATGTGGATGCTATGAGTGAGTGG
TTACTTGCGCGAACAGAGCAATCCTTACAAAGTCATATCCTGCTTGTACCACACCACGGTAGTAGGACATCTTCTACTGT
TGCTTTGATTAGTAAGGTGAACCCTGAAGTCGCTATTGCCTCGCTCGCTAAAGGCGGACGCTGGCAATTACCTTCCGCAC
AGGTTGTTCAACGCTACCAACAACATGGAGCAAACTGGTTGGATACGGGTGAAGCAGGGCAAATTAGCGTTATTTTTGGC
ATGCAGAATTATCAAGTTAGCAGCTTGCGTATCTCTCGCTCTCAGGCTTGGTATAGGCAGATGCTCCGTAACGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-172)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-681)

Competence protein (Competence)

(208-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

51.872

100

0.519
  comEC Vibrio parahaemolyticus RIMD 2210633

43.931

100

0.446
  comEC Vibrio campbellii strain DS40M4

43.857

100

0.444

Multiple sequence alignment