Detailed information NTG0411100

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GRF56_RS21465
• Genome accession: NZ_CP047155
• Coordinates: 4663363..4664235 (+)
• Length: 290 a.a.
• NCBI ID: WP_064341795.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain AVNIH1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4658363..4669235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRF56_RS21445 (GRF56_21445)	nadC	4658505..4659380 (+)	876	WP_042053539.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GRF56_RS22550 (GRF56_21450)	-	4659696..4660109 (+)	414	WP_074042658.1	pilin	-
GRF56_RS21455 (GRF56_21455)	pilB	4660113..4661819 (+)	1707	WP_005336134.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
GRF56_RS21460 (GRF56_21460)	pilC	4662060..4663301 (+)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
GRF56_RS21465 (GRF56_21465)	pilD	4663363..4664235 (+)	873	WP_064341795.1	prepilin peptidase	Machinery gene
GRF56_RS21470 (GRF56_21470)	coaE	4664249..4664863 (+)	615	WP_042053536.1	dephospho-CoA kinase	-
GRF56_RS21475 (GRF56_21475)	zapD	4664901..4665623 (+)	723	WP_201296125.1	cell division protein ZapD	-
GRF56_RS21480 (GRF56_21480)	yacG	4665633..4665827 (+)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
GRF56_RS21485 (GRF56_21485)	mutT	4665905..4666309 (-)	405	WP_019444787.1	8-oxo-dGTP diphosphatase MutT	-
GRF56_RS21490 (GRF56_21490)	secA	4666494..4669214 (-)	2721	WP_159144448.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32160.43 Da
• Isoelectric Point: 6.6856

>NTDB_id=411100 GRF56_RS21465 WP_064341795.1 4663363..4664235(+) (pilD) [Aeromonas veronii strain AVNIH1]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHSYFTPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=411100 GRF56_RS21465 WP_064341795.1 4663363..4664235(+) (pilD) [Aeromonas veronii strain AVNIH1]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCACAGCTACTTCA
CCCCCGATGAGGAGGCTACTGCACCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGTGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACAGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACCCCGGGCTGGGGCA
CGCTGGCGGCCCTGCTGCTGACCTGGGTGCTGGTTGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCCTTGCTGTGGGGCGGACTGTTGTTCAATCTGGCAGGTGGCTTCGTCCCCTTGGCTGATGCAGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCTATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGTTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.621	0.597
pilD	Vibrio campbellii strain DS40M4	56.098	98.966	0.555
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	50.37	93.103	0.469