Detailed information NTG0410924

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GQ674_RS14790
• Genome accession: NZ_CP047135
• Coordinates: 3270913..3272298 (+)
• Length: 461 a.a.
• NCBI ID: WP_159497679.1
• Uniprot ID: A0A6P1EJL1
• Organism: Stenotrophomonas sp. 364
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3265913..3277298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQ674_RS14775 (GQ674_14775)	sucD	3266793..3267668 (-)	876	WP_128097080.1	succinate--CoA ligase subunit alpha	-
GQ674_RS14780 (GQ674_14780)	sucC	3267690..3268859 (-)	1170	WP_159497677.1	ADP-forming succinate--CoA ligase subunit beta	-
GQ674_RS14785 (GQ674_14785)	-	3269211..3270824 (+)	1614	WP_159497678.1	ATP-binding protein	-
GQ674_RS14790 (GQ674_14790)	pilR	3270913..3272298 (+)	1386	WP_159497679.1	sigma-54 dependent transcriptional regulator	Regulator
GQ674_RS14795 (GQ674_14795)	pilB	3272374..3274101 (-)	1728	WP_159497680.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GQ674_RS14800 (GQ674_14800)	-	3274162..3275088 (-)	927	WP_159497681.1	serine hydrolase domain-containing protein	-
GQ674_RS14805 (GQ674_14805)	-	3275075..3276286 (-)	1212	WP_159497682.1	isoprenylcysteine carboxylmethyltransferase family protein	-
GQ674_RS14810 (GQ674_14810)	comP	3276361..3276810 (-)	450	WP_159497683.1	pilin	Machinery gene

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50160.54 Da
• Isoelectric Point: 6.8313

>NTDB_id=410924 GQ674_RS14790 WP_159497679.1 3270913..3272298(+) (pilR) [Stenotrophomonas sp. 364]
MNDTRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNSERAVPAAPPSEQAARLLGDSPAMNGLRTTITKVAR
SQAPVYILGESGVGKELVARTIHAQSARSAGTFVPVNCGAIPSELMESEFFGHKKGSFSGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSIRPVGAATEVPVDVRILSATHKDLGELVEDGRFRHDLYYRINVIELRVPPLRERRSDLP
QLAASILARLARTHERPTPLLAPSAIDALAQYHFPGNVRELENILERALALAESDSIGASDLRLPQHATPRHGAGPAPMH
EEAVVDLPAGNGALPSYIEQMERTAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1386 bp

>NTDB_id=410924 GQ674_RS14790 WP_159497679.1 3270913..3272298(+) (pilR) [Stenotrophomonas sp. 364]
ATGAACGACACCCGCAGCGCCCTCGTCGTCGACGACGAACGTGACATCCGCGAACTGCTGGTACTGACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAGTTGCTCGCCAGCAACCCGTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGGCTGGTCAAGCACGCGCTGGAGCTCAACAACAGCGAGCGCGCCGTACCTGCCGCGCCGC
CGTCGGAACAGGCTGCCCGCCTGCTGGGGGATTCGCCGGCGATGAACGGGCTGCGCACCACCATCACCAAGGTTGCGCGC
AGCCAGGCCCCGGTCTACATCCTGGGCGAATCGGGGGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGCGCAGAGCGC
GCGTTCGGCCGGCACCTTCGTCCCGGTCAACTGCGGCGCGATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGGCACA
AGAAAGGCAGCTTCAGCGGTGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCCCATGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAACTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGATCCGCCCGGTCGGTGC
CGCCACTGAAGTTCCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGGCGAACTGGTCGAGGACGGCCGCT
TCCGCCACGACCTGTATTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGTCGCAGCGACCTGCCG
CAACTGGCCGCCTCGATCCTGGCGCGGCTGGCCCGCACCCACGAGCGCCCCACCCCGCTGCTGGCACCGTCGGCCATCGA
CGCGCTGGCGCAGTACCACTTCCCGGGCAACGTACGCGAGTTGGAGAACATCCTGGAACGCGCCCTGGCCCTGGCCGAAT
CGGACAGCATCGGCGCCAGTGACCTGCGCCTGCCGCAGCACGCCACGCCGCGCCATGGCGCCGGCCCGGCACCGATGCAC
GAAGAAGCCGTGGTCGACCTGCCCGCGGGCAATGGTGCGCTGCCCTCCTACATCGAGCAGATGGAGCGCACCGCCATCCA
GAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAACTGGGCATCACCTTCCGCGCGTTGCGCTACA
AGCTGAAGAAGCTGGGCATGGATTGA

Domains

Predicted by InterProScan.

• Response regulator receiver domain (Response_reg) (8-115)

• Bacterial regulatory protein, Fis family (HTH_8) (418-458)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.363	99.132	0.618
pilR	Acinetobacter baumannii strain A118	48.927	100	0.495