Detailed information    

insolico Bioinformatically predicted

Overview


Name   vicK   Type   Regulator
Locus tag   SGPB_RS07440 Genome accession   NC_015600
Coordinates   1508754..1510106 (-) Length   450 a.a.
NCBI ID   WP_013852111.1    Uniprot ID   A0AAW6YHW1
Organism   Streptococcus pasteurianus ATCC 43144     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1503754..1515106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS07430 (SGPB_1446) rnc 1507004..1507690 (-) 687 WP_003065764.1 ribonuclease III -
  SGPB_RS07435 (SGPB_1447) vicX 1507944..1508753 (-) 810 WP_013852110.1 MBL fold metallo-hydrolase Regulator
  SGPB_RS07440 (SGPB_1448) vicK 1508754..1510106 (-) 1353 WP_013852111.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SGPB_RS07445 (SGPB_1449) vicR 1510099..1510809 (-) 711 WP_003065770.1 response regulator YycF Regulator
  SGPB_RS07450 (SGPB_1450) - 1511124..1511888 (+) 765 WP_003065772.1 amino acid ABC transporter ATP-binding protein -
  SGPB_RS07455 (SGPB_1451) - 1511899..1512711 (+) 813 WP_013852112.1 transporter substrate-binding domain-containing protein -
  SGPB_RS07460 (SGPB_1452) - 1512728..1513432 (+) 705 WP_003065775.1 amino acid ABC transporter permease -
  SGPB_RS07465 (SGPB_1453) - 1513444..1514091 (+) 648 WP_003065777.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 450 a.a.        Molecular weight: 51389.45 Da        Isoelectric Point: 4.6855

>NTDB_id=41085 SGPB_RS07440 WP_013852111.1 1508754..1510106(-) (vicK) [Streptococcus pasteurianus ATCC 43144]
MNDTMLQNLTYFEQAILFLLAFVAVYFVYLAIRDYRTSVNIRRLSGKVRELITGKYTEDIIIEKDRDLAELADQLNDLST
VFRLAQENLAQEKNRLASILSYMTDGVLATDRAGNITMINQTALQQLNLEQEEALQMNIVDILGADSTYSYHDLVSKTPE
IVLNRRDGTGEFITLRIRFALNRRDSGFISGLIAVLHDTTEQEKEDRERRLFVSNVSHELRTPLTSVKSYLEALDEGALK
EDIAPSFIKVSLDETNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTISGKQYEIVRDYPIKS
IWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSG
LGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLPYEKDSEIYDEWEDEEE

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=41085 SGPB_RS07440 WP_013852111.1 1508754..1510106(-) (vicK) [Streptococcus pasteurianus ATCC 43144]
ATGAATGATACAATGTTACAAAATTTAACTTATTTTGAACAAGCCATTCTCTTTCTTTTAGCATTTGTCGCAGTTTATTT
TGTTTATTTAGCGATAAGAGATTATCGAACTTCTGTTAATATTCGACGTTTGAGTGGTAAAGTGCGAGAGCTTATCACAG
GAAAATATACAGAAGATATTATTATTGAAAAAGATAGAGACTTAGCTGAGTTAGCTGACCAATTAAATGATTTGTCAACA
GTCTTTCGTTTAGCACAGGAAAATTTGGCGCAAGAAAAGAATCGTTTAGCAAGTATCTTATCCTATATGACAGACGGTGT
CTTGGCGACTGACCGTGCTGGAAATATCACAATGATTAATCAAACCGCGCTACAACAACTCAATTTAGAGCAAGAAGAAG
CTTTGCAGATGAATATTGTTGATATTTTAGGAGCTGATAGTACTTATAGTTATCATGATTTGGTGTCAAAAACACCTGAA
ATTGTCTTGAACCGTCGTGACGGAACAGGTGAATTTATTACTTTACGTATTCGATTTGCTCTAAATCGTCGTGATAGTGG
CTTTATTTCAGGGTTGATTGCTGTTTTGCATGACACAACCGAACAAGAAAAAGAAGACCGTGAGCGTCGCCTTTTCGTTT
CTAATGTTAGTCATGAATTGCGAACACCATTAACATCTGTAAAATCTTATCTGGAAGCTTTAGATGAAGGGGCACTCAAA
GAAGACATTGCGCCAAGCTTTATCAAAGTGTCTTTAGATGAAACAAACCGTATGATTCGTATGATTTCAGACTTACTTAA
TTTATCGCGTATTGATAATCAGACGGTTCAACTGGAAGTGGAAATGACCAATTTCACAGCTTTTATGACATCAATTCTTA
ACCGTTTTGATCAAATTAAAAGCCAACATACAATCAGTGGAAAACAGTATGAGATTGTCAGGGATTATCCGATTAAATCA
ATCTGGCTTGAAATTGATCCTGATAAGATGACGCAGGTTTTGGATAATATCCTTAATAATGCTATCAAATATTCACCAGA
TGGTGGAAAAATCACAGTTAGCATGAAAACGACGGAAACACAGTTGATTATCTCAATCTCTGATGAAGGGCTTGGTATTC
CTAAGAAAGATTTGCCATTGATTTTCGACCGTTTCTATCGTGTGGATAAGGCTCGAAGTCGTGCCCAAGGTGGTTCAGGA
CTCGGCTTAGCTATCGCAAAAGAAATTGTCAAACAACATAAAGGTTTTATTTGGGCACAAAGTACTTACGGAAAAGGGTC
GACCTTTACAATTGTACTTCCTTACGAAAAAGATTCTGAAATTTATGATGAATGGGAGGATGAAGAAGAGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

74.94

92.222

0.691

  micB Streptococcus pneumoniae Cp1015

66.038

94.222

0.622


Multiple sequence alignment