Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H1R75_RS09360 Genome accession   NZ_CP059471
Coordinates   1859035..1859628 (-) Length   197 a.a.
NCBI ID   WP_024344431.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1854035..1864628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS09340 (H1R75_09340) recA 1854546..1855700 (-) 1155 WP_004233517.1 recombinase RecA Machinery gene
  H1R75_RS09345 (H1R75_09345) cinA 1855750..1857009 (-) 1260 WP_182001413.1 competence/damage-inducible protein A Machinery gene
  H1R75_RS09350 (H1R75_09350) - 1857123..1858325 (-) 1203 WP_182001414.1 MFS transporter -
  H1R75_RS09355 (H1R75_09355) - 1858448..1859005 (-) 558 WP_182001415.1 DNA-3-methyladenine glycosylase I -
  H1R75_RS09360 (H1R75_09360) ruvA 1859035..1859628 (-) 594 WP_024344431.1 Holliday junction branch migration protein RuvA Machinery gene
  H1R75_RS09365 (H1R75_09365) hexB 1859629..1861572 (-) 1944 WP_115255541.1 DNA mismatch repair endonuclease MutL Machinery gene
  H1R75_RS09370 (H1R75_09370) hexA 1861686..1864256 (-) 2571 WP_074450865.1 DNA mismatch repair protein MutS Machinery gene
  H1R75_RS09375 (H1R75_09375) - 1864243..1864596 (-) 354 WP_027968295.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21727.16 Da        Isoelectric Point: 5.0719

>NTDB_id=410514 H1R75_RS09360 WP_024344431.1 1859035..1859628(-) (ruvA) [Streptococcus equinus strain MDC1]
MYDYIKGKLTKITAKYIVVEAGGLGYIINVANPYSFSDLMNQDVQIYLHQVVREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKTAQQMVLDLAGKFADVSMENGLASQAKAVANEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=410514 H1R75_RS09360 WP_024344431.1 1859035..1859628(-) (ruvA) [Streptococcus equinus strain MDC1]
ATGTACGATTATATCAAAGGAAAATTAACTAAAATTACTGCAAAATATATTGTCGTTGAAGCTGGAGGATTAGGCTACAT
TATCAACGTTGCTAATCCATACAGTTTTTCTGACTTGATGAATCAAGATGTTCAAATCTACCTTCATCAAGTTGTTCGAG
AAGATGCACAGCTTTTGTTTGGCTTTCATACAGAAGATGAAAAAGCAGTCTTTCTTAACCTTATTTCAGTTTCTGGAATT
GGTCCGACAACAGCGTTAGCGATTATCGCAGTGGATGATAATGAAGGTCTCGTAACTGCTATTGACAATAGTGATATTCG
TTATCTGATGAAATTTCCAAAAATCGGTAAAAAAACAGCTCAACAAATGGTGCTTGATTTAGCTGGTAAGTTTGCTGATG
TTTCTATGGAAAATGGCTTAGCTTCTCAGGCAAAAGCAGTGGCAAACGAACAGCTTGAAGAGGCCATGGAAGCTCTTTTG
GCACTTGGCTACAAGGCAGCAGAACTTAAGAAAATTCGTAAGTTCTTTGAAGGTACAAATGAAACCGCAGAACAATACAT
CAAATCAAGCCTTAAGATGTTGATGAAGGGCTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

68.687

100

0.69
  ruvA Streptococcus pneumoniae D39

68.687

100

0.69
  ruvA Streptococcus pneumoniae TIGR4

68.687

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.365

100

0.437