Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPHCH_RS11580 Genome accession   NC_015593
Coordinates   2468527..2469099 (+) Length   190 a.a.
NCBI ID   WP_013848206.1    Uniprot ID   F6EXP8
Organism   Sphingobium chlorophenolicum L-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2463527..2474099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPHCH_RS11555 (Sphch_2296) - 2463789..2464085 (+) 297 WP_013848201.1 SEL1-like repeat protein -
  SPHCH_RS11560 (Sphch_2297) - 2464294..2465379 (-) 1086 WP_013848202.1 alkene reductase -
  SPHCH_RS11565 (Sphch_2298) - 2465585..2466250 (+) 666 WP_013848203.1 COQ9 family protein -
  SPHCH_RS11570 (Sphch_2299) - 2466366..2466623 (+) 258 WP_013848204.1 FeoA family protein -
  SPHCH_RS11575 (Sphch_2300) - 2466620..2468476 (+) 1857 WP_013848205.1 ferrous iron transporter B -
  SPHCH_RS11580 (Sphch_2301) ssb 2468527..2469099 (+) 573 WP_013848206.1 single-stranded DNA-binding protein Machinery gene
  SPHCH_RS11585 (Sphch_2302) - 2469177..2469482 (-) 306 WP_013848207.1 hypothetical protein -
  SPHCH_RS11590 (Sphch_2303) - 2469620..2470000 (+) 381 WP_013848208.1 RidA family protein -
  SPHCH_RS11595 (Sphch_2304) - 2470006..2470362 (+) 357 WP_013848209.1 ArsC family reductase -
  SPHCH_RS11600 (Sphch_2305) - 2470374..2471393 (+) 1020 WP_086011156.1 glycerophosphodiester phosphodiesterase -
  SPHCH_RS11605 (Sphch_2306) - 2471433..2471858 (+) 426 WP_013848211.1 Rrf2 family transcriptional regulator -
  SPHCH_RS11610 (Sphch_2307) - 2472128..2472784 (+) 657 WP_041390893.1 MBL fold metallo-hydrolase -
  SPHCH_RS11615 (Sphch_2308) - 2472787..2473218 (-) 432 WP_013848213.1 MAPEG family protein -
  SPHCH_RS11620 (Sphch_2309) rpmF 2473426..2473605 (+) 180 WP_013848214.1 50S ribosomal protein L32 -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 19403.94 Da        Isoelectric Point: 5.0178

>NTDB_id=41042 SPHCH_RS11580 WP_013848206.1 2468527..2469099(+) (ssb) [Sphingobium chlorophenolicum L-1]
MAGSVNKVILVGNLGADPEVRSFQNGGKVCNIRIATSETWKDRNSGERKERTEWHSVAIFSEGLAGVAERYLRKGSKVYV
EGKLQTRKWQDQSGNDRYTTEVVLQGPSAVLTMLDGAPGGGSGGGRSQGGGDWSGGSSGFGGGDYDDFGGGGGGNFGGGS
GSGTGRSSGGGRGSAGGPNFDNDLDDEVPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=41042 SPHCH_RS11580 WP_013848206.1 2468527..2469099(+) (ssb) [Sphingobium chlorophenolicum L-1]
ATGGCGGGTTCGGTCAACAAGGTCATTCTGGTGGGCAATCTGGGCGCGGACCCGGAAGTCCGCAGCTTCCAGAATGGCGG
CAAGGTGTGCAACATCCGCATCGCGACGTCCGAGACCTGGAAAGACCGCAACAGCGGGGAGCGCAAGGAGCGCACCGAGT
GGCACAGCGTCGCGATCTTCTCCGAAGGTCTGGCGGGCGTCGCCGAACGCTATCTGCGCAAGGGCAGCAAGGTCTATGTC
GAGGGCAAGCTGCAGACCCGCAAGTGGCAGGACCAGTCGGGCAATGACCGCTACACCACCGAAGTCGTGTTGCAGGGCCC
CAGCGCCGTACTGACCATGCTGGACGGCGCGCCGGGCGGCGGCAGCGGTGGCGGACGTTCGCAGGGCGGCGGTGACTGGA
GCGGCGGATCGAGCGGCTTCGGCGGCGGCGACTATGACGATTTCGGCGGCGGCGGCGGTGGTAACTTCGGCGGCGGTTCC
GGCTCTGGCACAGGCCGTTCATCGGGTGGCGGGCGCGGCAGCGCGGGCGGCCCGAATTTCGACAACGACCTGGATGACGA
AGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6EXP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.691

100

0.489
  ssb Vibrio cholerae strain A1552

48.148

99.474

0.479
  ssb Neisseria meningitidis MC58

37.037

99.474

0.368

Multiple sequence alignment