Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   GPZ88_RS09785 Genome accession   NZ_CP046919
Coordinates   1934743..1935183 (-) Length   146 a.a.
NCBI ID   WP_006531250.1    Uniprot ID   A0A380KQ77
Organism   Streptococcus ruminicola strain CNU_G2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1929743..1940183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS09765 (GPZ88_09745) - 1929744..1930424 (-) 681 WP_166044302.1 response regulator transcription factor -
  GPZ88_RS09770 (GPZ88_09750) - 1930427..1931062 (-) 636 WP_166044304.1 GTP pyrophosphokinase -
  GPZ88_RS09775 (GPZ88_09755) rcrQ 1931163..1932935 (-) 1773 WP_166044306.1 ABC transporter ATP-binding protein Regulator
  GPZ88_RS09780 (GPZ88_09760) rcrP 1932925..1934739 (-) 1815 WP_166044308.1 ABC transporter ATP-binding protein Regulator
  GPZ88_RS09785 (GPZ88_09765) rcrR 1934743..1935183 (-) 441 WP_006531250.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GPZ88_RS09790 (GPZ88_09770) - 1935327..1935737 (-) 411 WP_166044310.1 peptide deformylase -
  GPZ88_RS09795 (GPZ88_09775) - 1935734..1936243 (-) 510 WP_093814675.1 GNAT family N-acetyltransferase -
  GPZ88_RS09800 (GPZ88_09780) gdhA 1936400..1937749 (-) 1350 WP_074626687.1 NADP-specific glutamate dehydrogenase -
  GPZ88_RS09805 (GPZ88_09785) - 1937985..1938482 (+) 498 WP_039696754.1 DUF308 domain-containing protein -
  GPZ88_RS09810 (GPZ88_09790) queF 1938519..1939010 (-) 492 WP_074626685.1 preQ(1) synthase -
  GPZ88_RS09815 (GPZ88_09795) queE 1939159..1939872 (-) 714 WP_074626684.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17108.62 Da        Isoelectric Point: 8.4635

>NTDB_id=409460 GPZ88_RS09785 WP_006531250.1 1934743..1935183(-) (rcrR) [Streptococcus ruminicola strain CNU_G2]
MRDKDPFSQFRYFINLMENRVHELGEQHGVENLAGPQGFAVLYLRENEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGF
IEVVPSEVDKRYKRVVLTELGKAKSKDIDAFHTAIHKQIFDGISREELEISGRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=409460 GPZ88_RS09785 WP_006531250.1 1934743..1935183(-) (rcrR) [Streptococcus ruminicola strain CNU_G2]
ATGCGAGACAAAGATCCGTTTTCACAATTTAGATACTTTATTAATTTGATGGAGAATCGGGTACATGAGCTCGGTGAGCA
GCATGGTGTTGAAAATCTCGCTGGTCCGCAGGGTTTTGCAGTTCTTTATTTACGTGAAAATGAAGACAAGGAAGTTTTCA
TCAAGGACATTGAGCGTAAGCTTAAGATTTCAAAATCTGTGACCAGTAATTTGATTAAGCGAATGGAGAAGAATGGCTTT
ATTGAGGTGGTTCCGTCAGAGGTTGATAAGCGTTATAAGCGTGTCGTCTTGACTGAGCTGGGCAAAGCAAAATCCAAAGA
CATCGATGCTTTTCATACTGCTATTCATAAACAAATTTTTGATGGTATTAGCCGTGAAGAACTAGAAATTTCTGGTCGTG
TCTTTGATCGCATTTTGAAAAACTTAGAAAACAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380KQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

54.545

97.945

0.534

Multiple sequence alignment