Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GPZ88_RS09780 Genome accession   NZ_CP046919
Coordinates   1932925..1934739 (-) Length   604 a.a.
NCBI ID   WP_166044308.1    Uniprot ID   A0A6G8I2L2
Organism   Streptococcus ruminicola strain CNU_G2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1927925..1939739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPZ88_RS09760 (GPZ88_09740) - 1928509..1929735 (-) 1227 WP_166044300.1 sensor histidine kinase -
  GPZ88_RS09765 (GPZ88_09745) - 1929744..1930424 (-) 681 WP_166044302.1 response regulator transcription factor -
  GPZ88_RS09770 (GPZ88_09750) - 1930427..1931062 (-) 636 WP_166044304.1 GTP pyrophosphokinase -
  GPZ88_RS09775 (GPZ88_09755) rcrQ 1931163..1932935 (-) 1773 WP_166044306.1 ABC transporter ATP-binding protein Regulator
  GPZ88_RS09780 (GPZ88_09760) rcrP 1932925..1934739 (-) 1815 WP_166044308.1 ABC transporter ATP-binding protein Regulator
  GPZ88_RS09785 (GPZ88_09765) rcrR 1934743..1935183 (-) 441 WP_006531250.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GPZ88_RS09790 (GPZ88_09770) - 1935327..1935737 (-) 411 WP_166044310.1 peptide deformylase -
  GPZ88_RS09795 (GPZ88_09775) - 1935734..1936243 (-) 510 WP_093814675.1 GNAT family N-acetyltransferase -
  GPZ88_RS09800 (GPZ88_09780) gdhA 1936400..1937749 (-) 1350 WP_074626687.1 NADP-specific glutamate dehydrogenase -
  GPZ88_RS09805 (GPZ88_09785) - 1937985..1938482 (+) 498 WP_039696754.1 DUF308 domain-containing protein -
  GPZ88_RS09810 (GPZ88_09790) queF 1938519..1939010 (-) 492 WP_074626685.1 preQ(1) synthase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67110.10 Da        Isoelectric Point: 5.5856

>NTDB_id=409459 GPZ88_RS09780 WP_166044308.1 1932925..1934739(-) (rcrP) [Streptococcus ruminicola strain CNU_G2]
MLKIFKRLTAKEIIMMIIAVLFVCLNVFLDLKIPDYMSDITSLLSTQGTKAKDIFAWNLDAPGMRMVLLSLGSFAASVVV
GFLAARIAASFSTRLRDDIFHSVLDFSDAEIKKFSIPSLLTRTTNDITQIQLVFTMGLQVITKGPIMAIWAITKIADKNH
EWLMVLVVAVAVMILMLIFLLMMVMPKQRMIQKLTDKLNSITRESLTGIRVVRAYNAESYQDGKFAKANDNVTNFNLFIN
RSMALMSPVMTSISSGMTLAIYWIGAFLIEDIAIPKDPTKIAGAMQDKVNIFSDMVVYSSYAMQVVIGFMMMIIVFFILP
RAVVAAGRINEVLDTKPSVIYPEESKVQPVEKGSVEFDDVSFRYSDHSEAVLEHVSFKAKAGDTVAFIGSTGSGKSTLVN
LIPRFYDASEGTIKVDGVDVRDYDHDTLHKIIGYIPQKAVLFSGDIASNMDMGDSNSSPLDDDKMWEALDLAQGKDFVES
KEGQLKAQVSQGGQNFSGGQKQRLAIARALARKPEIIIFDDSFSALDYKTDRILRSQLKERTADMTKLIVAQRISTIMDA
DQILVLDEGKVVGQGTHEELLANNEVYREIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=409459 GPZ88_RS09780 WP_166044308.1 1932925..1934739(-) (rcrP) [Streptococcus ruminicola strain CNU_G2]
ATGTTAAAAATTTTTAAACGTTTAACGGCAAAAGAAATCATCATGATGATTATTGCCGTCTTATTTGTGTGTTTGAATGT
TTTCTTGGATTTGAAAATTCCAGATTACATGTCTGACATCACATCCTTGCTCTCAACTCAAGGAACAAAAGCAAAAGATA
TTTTTGCTTGGAATCTAGATGCCCCAGGTATGCGTATGGTCTTGCTTTCTTTAGGAAGTTTTGCAGCCTCTGTAGTTGTC
GGATTCTTAGCCGCACGCATCGCAGCAAGTTTCAGTACGCGTTTGCGTGATGATATTTTCCATAGTGTTTTGGACTTTTC
GGATGCGGAAATCAAGAAATTTTCAATTCCAAGTCTTTTGACACGTACAACAAATGACATTACTCAAATTCAGTTGGTCT
TTACCATGGGACTTCAAGTTATTACCAAAGGACCCATTATGGCAATCTGGGCAATCACGAAGATTGCTGATAAAAACCAT
GAGTGGTTGATGGTGCTGGTTGTAGCAGTGGCTGTCATGATTTTGATGTTGATTTTCTTGTTGATGATGGTAATGCCAAA
ACAACGCATGATTCAAAAATTAACAGATAAATTGAACAGTATTACACGTGAGTCATTGACAGGTATTCGTGTTGTTCGTG
CTTACAATGCTGAAAGTTATCAAGATGGTAAATTTGCTAAAGCTAATGATAACGTGACAAACTTTAACCTCTTTATCAAC
CGTTCAATGGCTTTGATGTCGCCAGTTATGACAAGTATTTCAAGCGGGATGACTTTGGCCATTTATTGGATCGGTGCCTT
CTTGATTGAGGATATTGCTATTCCAAAAGATCCAACTAAAATCGCTGGTGCTATGCAAGATAAAGTTAATATCTTCTCAG
ATATGGTGGTTTATTCATCATATGCCATGCAGGTGGTCATTGGATTTATGATGATGATTATTGTCTTCTTCATTCTTCCC
CGTGCAGTTGTTGCTGCTGGTCGTATCAATGAAGTTTTAGATACAAAACCATCTGTTATTTATCCTGAAGAAAGTAAAGT
TCAGCCGGTCGAAAAAGGTTCTGTAGAATTTGATGATGTGTCTTTCCGATATAGCGATCATTCGGAAGCTGTTTTGGAAC
ATGTTTCCTTTAAAGCTAAAGCAGGTGATACGGTTGCCTTTATCGGATCAACTGGTTCAGGTAAATCAACATTGGTAAAC
TTGATTCCTCGTTTTTATGATGCAAGTGAAGGAACAATCAAAGTTGACGGTGTTGACGTTCGTGATTACGATCATGACAC
CCTTCACAAGATTATTGGTTACATTCCGCAAAAAGCTGTGCTCTTTAGTGGAGACATTGCTTCAAATATGGACATGGGTG
ACAGCAATAGTTCACCGCTTGATGATGACAAGATGTGGGAAGCACTTGATTTGGCACAAGGTAAAGACTTCGTTGAAAGT
AAAGAAGGTCAATTGAAAGCCCAAGTCTCTCAAGGTGGTCAAAACTTCTCAGGTGGTCAAAAACAACGTTTGGCAATTGC
GCGTGCACTTGCCCGTAAACCTGAAATTATCATCTTTGATGATTCATTCTCAGCGCTTGATTATAAGACTGACCGAATCC
TTCGTTCTCAATTGAAAGAACGTACAGCTGACATGACTAAGTTGATTGTTGCCCAACGTATTTCAACAATCATGGATGCC
GATCAAATCTTAGTCTTGGATGAAGGAAAAGTAGTTGGTCAAGGTACTCACGAAGAATTGCTTGCAAATAATGAAGTTTA
TCGTGAAATTGCCTACTCACAATTATCTAAGGAGGAATTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-270)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8I2L2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.777

100

0.669

Multiple sequence alignment