Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GQA94_RS07390 Genome accession   NZ_CP046902
Coordinates   1587656..1588996 (-) Length   446 a.a.
NCBI ID   WP_158187402.1    Uniprot ID   A0A6I6LLE3
Organism   Stutzerimonas stutzeri strain PM101005     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582656..1593996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQA94_RS07375 (GQA94_07375) - 1582725..1584689 (-) 1965 WP_158187399.1 methyl-accepting chemotaxis protein -
  GQA94_RS07380 (GQA94_07380) - 1584738..1586351 (-) 1614 WP_158187400.1 PleD family two-component system response regulator -
  GQA94_RS07385 (GQA94_07385) - 1586566..1587621 (+) 1056 WP_158187401.1 DUF2333 family protein -
  GQA94_RS07390 (GQA94_07390) pilR 1587656..1588996 (-) 1341 WP_158187402.1 sigma-54 dependent transcriptional regulator Regulator
  GQA94_RS07395 (GQA94_07395) pilS 1589108..1590700 (-) 1593 WP_158187403.1 ATP-binding protein Regulator
  GQA94_RS07400 (GQA94_07400) - 1590690..1590926 (-) 237 WP_158187404.1 PP0621 family protein -
  GQA94_RS07405 (GQA94_07405) - 1591024..1592031 (-) 1008 WP_158187405.1 outer membrane protein assembly factor BamD -
  GQA94_RS07410 (GQA94_07410) rluD 1592324..1593298 (+) 975 WP_158187406.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49848.40 Da        Isoelectric Point: 6.6148

>NTDB_id=409222 GQA94_RS07390 WP_158187402.1 1587656..1588996(-) (pilR) [Stutzerimonas stutzeri strain PM101005]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLSREHYDLCLTDMRLPDGCGLELVQFIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRNPNPNDLTVDSRLLGVSPPMNVLRKQIGKLARSQAPV
YISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAADGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRSVGGAKEVVVDVRILCATHKDLACEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLSEV
MLRRLAQDGGAPPARLHPDALAKLQSYRFPGNVRELENMLERAYTLCEGEEIKASDLRLSEAPGAPENGEASLAQIDNLE
DHLEEVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=409222 GQA94_RS07390 WP_158187402.1 1587656..1588996(-) (pilR) [Stutzerimonas stutzeri strain PM101005]
ATGACTGCCCGCCAGAAAGCGTTGATCATCGATGACGAGCCCGATATCCGGGAACTCCTGGAGATCACCCTCGGGCGTAT
GAAACTGGACACCCGCAGCGCGCGCAACCTCAAGGAAGCCCGAGAATGCCTGTCGCGCGAACACTATGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGTTGCGGCCTGGAACTGGTGCAGTTCATCCAGCAGCAGTATCCGCAGCTACCCGTGGCC
ATGATCACGGCCTACGGCAGCCTCGACACGGCCATTGGCGCGCTCAAGGCGGGGGCGTTCGACTTTCTCACCAAACCGGT
GGATCTCGGCCGCCTGCGCGAATTGGTCAACACCGCGCTGCGGCTGCGTAATCCGAACCCGAACGACCTGACGGTCGACA
GCCGCCTGCTCGGCGTCTCGCCCCCCATGAACGTGCTACGCAAGCAGATCGGCAAGCTGGCGCGCAGCCAGGCACCGGTG
TACATCAGCGGGGAGTCGGGCAGCGGCAAGGAGCTGGTGGCGCGGCTGATCCATGAGCAAGGCCCACGTCACGAGCGCCC
ATTCGTTCCGGTCAACTGCGGGGCCATCCCGTCTGAGCTCATGGAAAGCGAGTTCTTCGGGCACAAGAAAGGCAGTTTTA
CCGGGGCGATGGAGGACAAGCCGGGATTGTTCCAGGCGGCGGACGGCGGCACCTTGTTCCTCGACGAGGTGGCCGACCTG
CCCCTGCCCATGCAGGTCAAGCTGCTGCGTGCGATCCAGGAAAAGGCCGTGCGCTCGGTGGGCGGCGCCAAGGAGGTTGT
GGTCGACGTACGGATCCTTTGCGCCACGCATAAGGATCTGGCCTGCGAAGTGGCCGCGGGCCGGTTCCGCCAGGACCTGT
ACTATCGCCTGAACGTCATCGAGCTGCGCGTTCCGCCCTTGCGCGAACGCCGTGAGGACATTGCCCAACTGTCCGAAGTG
ATGCTTCGCCGCCTCGCTCAGGACGGTGGCGCCCCGCCCGCGCGGCTGCACCCCGACGCGCTGGCAAAGCTGCAGAGCTA
CCGATTCCCCGGCAACGTGCGCGAACTGGAAAATATGCTCGAGCGCGCCTATACGCTGTGCGAGGGCGAGGAGATCAAAG
CCAGCGACCTGCGCCTATCCGAAGCCCCAGGTGCGCCCGAAAACGGCGAGGCGAGCCTGGCGCAGATCGACAACCTCGAA
GACCACCTCGAGGAGGTCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACACGCTGGAATCGCACCGCCGCCGCCCA
ACGGCTCGGCCTGTCGTTCCGCTCGATGCGCTATCGCCTGAAAAAGCTCGGATTGGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6LLE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

83.559

99.552

0.832
  pilR Acinetobacter baumannii strain A118

49.13

100

0.507
  luxO Vibrio cholerae strain A1552

38.702

100

0.388

Multiple sequence alignment