Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GP482_RS05520 Genome accession   NZ_CP046875
Coordinates   1136064..1136873 (-) Length   269 a.a.
NCBI ID   WP_074602529.1    Uniprot ID   A0AAE8L3J1
Organism   Streptococcus ruminicola strain CNU_77-61     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131064..1141873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GP482_RS05510 (GP482_05510) smc 1131465..1135004 (-) 3540 WP_158914291.1 chromosome segregation protein SMC -
  GP482_RS05515 (GP482_05515) rnc 1135156..1135842 (-) 687 WP_020917219.1 ribonuclease III -
  GP482_RS05520 (GP482_05520) vicX 1136064..1136873 (-) 810 WP_074602529.1 MBL fold metallo-hydrolase Regulator
  GP482_RS05525 (GP482_05525) vicK 1136874..1138226 (-) 1353 WP_039696510.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GP482_RS05530 (GP482_05530) vicR 1138219..1138929 (-) 711 WP_039696509.1 response regulator YycF Regulator
  GP482_RS05535 (GP482_05535) - 1139241..1140005 (+) 765 WP_039696508.1 amino acid ABC transporter ATP-binding protein -
  GP482_RS05540 (GP482_05540) - 1140016..1140828 (+) 813 WP_158914293.1 transporter substrate-binding domain-containing protein -
  GP482_RS05545 (GP482_05545) - 1140844..1141551 (+) 708 WP_039696506.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30096.95 Da        Isoelectric Point: 5.5642

>NTDB_id=409122 GP482_RS05520 WP_074602529.1 1136064..1136873(-) (vicX) [Streptococcus ruminicola strain CNU_77-61]
MSENAFKYSVLASGSTGNSFYVETPQKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVLARRYNLD
VYANAKTWQMIDERNMIGKLDVGQKHVFERGKTLTFGDIDIESFGVSHDAVDPQFYRLMKDNKSFVVLTDTGYVSDRMAG
VIENADGYLIESNHDVEILRAGSYPWSLKQRILSDRGHLSNEDGADTMIRTIGNRTKRIYLGHLSKENNIKELAHMTMEN
NLMQADFAVGHDMTVFDTSPDEATPLAGL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=409122 GP482_RS05520 WP_074602529.1 1136064..1136873(-) (vicX) [Streptococcus ruminicola strain CNU_77-61]
ATGTCTGAGAATGCTTTTAAATACAGTGTCTTAGCCTCCGGTTCAACTGGAAATTCATTTTATGTGGAAACGCCACAAAA
ACGTCTTTTGATAGATGCAGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGAAAACCAGAAGATT
TGGATGCTATTTTGATTACGCACGAACACTCTGATCACATTAAAGGAGTAGGAGTGCTGGCTCGCAGATACAATCTTGAT
GTATATGCCAATGCCAAAACTTGGCAAATGATTGATGAGCGCAACATGATTGGAAAACTTGATGTTGGGCAAAAACATGT
CTTTGAACGTGGTAAAACATTGACTTTTGGTGATATTGATATTGAAAGTTTTGGAGTCAGTCACGATGCTGTCGATCCGC
AATTTTACCGTTTGATGAAAGATAATAAGTCATTTGTCGTTCTGACAGATACTGGTTATGTTAGTGACCGAATGGCGGGT
GTGATTGAAAATGCTGATGGTTATCTGATTGAGTCAAACCATGATGTTGAGATTTTGCGTGCGGGTTCTTATCCGTGGAG
CTTGAAACAACGTATTCTATCTGATCGTGGTCACTTGTCAAATGAAGATGGTGCTGATACCATGATTCGTACTATCGGCA
ATCGCACAAAAAGAATTTATCTTGGACACTTGAGTAAAGAAAATAATATCAAAGAATTGGCTCATATGACCATGGAAAAT
AACTTGATGCAAGCCGATTTTGCTGTTGGTCATGACATGACTGTTTTTGATACATCACCTGATGAAGCAACGCCTTTAGC
AGGTCTATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment