Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GPM17_RS07510 Genome accession   NZ_CP046872
Coordinates   1657024..1659240 (+) Length   738 a.a.
NCBI ID   WP_185280098.1    Uniprot ID   -
Organism   Pseudomonas putida strain MX-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1652024..1664240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPM17_RS07490 (GPM17_07490) - 1653900..1654523 (+) 624 WP_185280097.1 glutathione S-transferase -
  GPM17_RS07495 (GPM17_07495) - 1654657..1655589 (+) 933 WP_003247127.1 ABC transporter ATP-binding protein -
  GPM17_RS07500 (GPM17_07500) - 1655586..1656365 (+) 780 WP_047604512.1 ABC transporter permease -
  GPM17_RS07505 (GPM17_07505) - 1656375..1656881 (-) 507 Protein_1472 DUF2062 domain-containing protein -
  GPM17_RS07510 (GPM17_07510) comA 1657024..1659240 (+) 2217 WP_185280098.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPM17_RS07515 (GPM17_07515) exbB 1659396..1660031 (+) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GPM17_RS07520 (GPM17_07520) - 1660028..1660462 (+) 435 WP_003247134.1 biopolymer transporter ExbD -
  GPM17_RS07525 (GPM17_07525) lpxK 1660462..1661463 (+) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  GPM17_RS07530 (GPM17_07530) - 1661508..1661693 (+) 186 WP_003247142.1 Trm112 family protein -
  GPM17_RS07535 (GPM17_07535) kdsB 1661690..1662454 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPM17_RS07540 (GPM17_07540) - 1662454..1662918 (+) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  GPM17_RS07545 (GPM17_07545) murB 1662915..1663934 (+) 1020 WP_185280099.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79595.59 Da        Isoelectric Point: 10.4818

>NTDB_id=409044 GPM17_RS07510 WP_185280098.1 1657024..1659240(+) (comA) [Pseudomonas putida strain MX-2]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWALGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGMAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPWWAWLLVCLGVLLLLLPRGVPLRGLGGVMLLALW
VPREPVPFGQIEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAV
AIARGLPIKRIIGGEALVDVPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEVAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=409044 GPM17_RS07510 WP_185280098.1 1657024..1659240(+) (comA) [Pseudomonas putida strain MX-2]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTATGGGCGTTGGGATGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGCACTGCACAAGGCGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGTTTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AACGCCCGGCCGGGCTGCTGAACCCGCACGGGCCTGACCGGGAAGCGCAGTTGCTGGCACGACGGGTGGGGGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCACTGGTGCTTGGCGATGGTGCGGGCATGGCACGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGCGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCGGGTGGTGGGGTGCCAGTGCAGCGGGCCTGTCTGATGCTGGCCGTAGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCTTTTTTTCCGTTGCTGCTTGCACTGGTCGCTGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGGGG
TTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTGATCGCCATTGGTTTGCTGCCGGTGTTGCTGGCCACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAATCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCATTGGCGTTG
TTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAACAGCGCCCGGCATGGGTGCCGCCGGCCCTGCCGTGGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGTGCTGTTGCTTTTGCTGCCTCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTACCCAGGGAGCCGGTGCCGTTTGGCCAAATCGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTGCTCTTGCG
TACGCGGCATCACAGCCTGCTTTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATGCGGGCGGGGCCGTG
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCGTGTGCCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGTTTTTCGTTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTGCTGTTGGTCGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGTTGCTGCCGAACGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGTTTCGGGCACCCCCACGTGCAGGTGGTCG
AGCGGTATGGGCGGCATGGGGTGGTGATGCATGATACGGCGGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTGGGGGGTGGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(12-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.252

97.696

0.569
  comA Ralstonia pseudosolanacearum GMI1000

34.821

100

0.37

Multiple sequence alignment