Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GPM17_RS07515 Genome accession   NZ_CP046872
Coordinates   1659396..1660031 (+) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida strain MX-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1654396..1665031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPM17_RS07495 (GPM17_07495) - 1654657..1655589 (+) 933 WP_003247127.1 ABC transporter ATP-binding protein -
  GPM17_RS07500 (GPM17_07500) - 1655586..1656365 (+) 780 WP_047604512.1 ABC transporter permease -
  GPM17_RS07505 (GPM17_07505) - 1656375..1656881 (-) 507 Protein_1472 DUF2062 domain-containing protein -
  GPM17_RS07510 (GPM17_07510) comA 1657024..1659240 (+) 2217 WP_185280098.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPM17_RS07515 (GPM17_07515) exbB 1659396..1660031 (+) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GPM17_RS07520 (GPM17_07520) - 1660028..1660462 (+) 435 WP_003247134.1 biopolymer transporter ExbD -
  GPM17_RS07525 (GPM17_07525) lpxK 1660462..1661463 (+) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  GPM17_RS07530 (GPM17_07530) - 1661508..1661693 (+) 186 WP_003247142.1 Trm112 family protein -
  GPM17_RS07535 (GPM17_07535) kdsB 1661690..1662454 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPM17_RS07540 (GPM17_07540) - 1662454..1662918 (+) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  GPM17_RS07545 (GPM17_07545) murB 1662915..1663934 (+) 1020 WP_185280099.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=409045 GPM17_RS07515 WP_003247132.1 1659396..1660031(+) (exbB) [Pseudomonas putida strain MX-2]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=409045 GPM17_RS07515 WP_003247132.1 1659396..1660031(+) (exbB) [Pseudomonas putida strain MX-2]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment