Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   H0230_RS03265 Genome accession   NZ_CP059157
Coordinates   627958..629931 (-) Length   657 a.a.
NCBI ID   WP_002855027.1    Uniprot ID   Q9PPM7
Organism   Campylobacter jejuni subsp. jejuni strain OBT12377     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 622958..634931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0230_RS03245 (H0230_03245) kdpB 623384..625431 (+) 2048 Protein_628 potassium-transporting ATPase subunit KdpB -
  H0230_RS08505 (H0230_03255) - 625433..626031 (+) 599 Protein_629 potassium-transporting ATPase subunit C -
  H0230_RS08420 - 626034..627179 (+) 1146 WP_002854960.1 histidine kinase -
  H0230_RS08425 - 627130..627579 (+) 450 WP_227889155.1 DUF4118 domain-containing protein -
  H0230_RS03265 (H0230_03265) uvrB 627958..629931 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB Machinery gene
  H0230_RS03270 (H0230_03270) - 630085..630315 (+) 231 WP_002852327.1 hypothetical protein -
  H0230_RS03275 (H0230_03275) - 630305..630547 (+) 243 WP_002854947.1 hypothetical protein -
  H0230_RS03280 (H0230_03280) Cj0683 630544..630981 (+) 438 WP_180819998.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H0230_RS03285 (H0230_03285) priA 630963..632816 (+) 1854 WP_021137800.1 primosomal protein N' -
  H0230_RS03290 (H0230_03290) cipA 632826..634223 (-) 1398 Protein_637 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75935.50 Da        Isoelectric Point: 6.8371

>NTDB_id=409004 H0230_RS03265 WP_002855027.1 627958..629931(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain OBT12377]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=409004 H0230_RS03265 WP_002855027.1 627958..629931(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain OBT12377]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACTTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCTACTCTTATCATGAGTCACAACAAAAGCCTTTGCGCTCAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCGACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCACTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCAGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCGGATTTTAGAGTTCAAGGAGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTGGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTTATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGATATCAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTCATAGTCGATGAAAGTCATGTATCTTTACCTCAATT
TCGTGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCTACACCTGCACCTTTAGAA
CTTGAACTTAGCAAAGAAAATATCTTTCATCAAATCATGCGTCCTACGGGACTGCTTGATCCTTTAATAGAGTTAAAAGA
TAGCGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACCGTGC
TAACTAAAAAACTCGCTGAAGAGCTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGTGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTAGACCTACCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACCACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACACCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTAAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCAAAGCTTGTCAAAGAGTTAAGAAAGCAAATGCTTGAAGCAGCCAAAGCACTTGAG
TTTGAAAAAGCTGCCGCAATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

Ultra-violet resistance protein B (UvrB)

(552-593)

UvrB interaction domain (UvrB_inter)

(158-246)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PPM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae D39

50.926

98.63

0.502

Multiple sequence alignment