Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GO174_RS03180 Genome accession   NZ_CP046857
Coordinates   678924..681161 (+) Length   745 a.a.
NCBI ID   WP_158124609.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0233     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 673924..686161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO174_RS03155 - 674375..674944 (-) 570 WP_024373531.1 hypothetical protein -
  GO174_RS03160 lolC 675120..676328 (+) 1209 WP_199252281.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GO174_RS03165 lolD 676321..677007 (+) 687 WP_020327790.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GO174_RS03170 lolE 677008..678252 (+) 1245 WP_158124606.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GO174_RS03175 - 678385..678915 (-) 531 WP_020327788.1 DUF2062 domain-containing protein -
  GO174_RS03180 comEC 678924..681161 (+) 2238 WP_158124609.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GO174_RS03185 msbA 681194..682942 (+) 1749 WP_158124612.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GO174_RS03190 lpxK 682946..683953 (+) 1008 WP_158124615.1 tetraacyldisaccharide 4'-kinase -
  GO174_RS03195 - 683934..684113 (+) 180 WP_020327784.1 Trm112 family protein -
  GO174_RS03200 kdsB 684113..684856 (+) 744 WP_020327783.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83410.75 Da        Isoelectric Point: 8.3791

>NTDB_id=408990 GO174_RS03180 WP_158124609.1 678924..681161(+) (comEC) [Vibrio fluvialis strain 2015AW-0233]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMTTLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQQLHTFWQPKVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNLRSMLYRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHI
GMAFAIGYLIGSAMMRLHVSLLWMPFVCGMCIAAIYAWLAGFTLPTQRALLMCGLNVALTMSGVRVTAVQRILITLAAVL
IVTPFAPLSNSFWLSFLAVALVLYQLADRTTCHGWRKWLTVQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLTLFLTTFVGDITWLWRGIDLSFWPLQRALEWAGSSWIAVSQTAAVVFSVGLLLWICRPVLSWRAQLYAGIALLGF
GFFTPHDERWRVDILDVGHGLAVLIERNHNALLYDTGSGWPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKD
AETLLSPKWVVASQSGPNWQACHTGEQWEWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIASLAKGNQWQLPHRSVVARYVDAGSDWLDTGEAGQITLTYQAQ
SRQLSTLRQIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=408990 GO174_RS03180 WP_158124609.1 678924..681161(+) (comEC) [Vibrio fluvialis strain 2015AW-0233]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCCCTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGACCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATCAATGGACAACAATTGCACACTTTTTGGCAGCCGAAGGTGCGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTC
AGTCAAGGTTGGGTTGCGAGAGTGAACGTTAAACCTCAGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTGCGCAGTAT
GTTGTACCGCCAAATCAAAACATGGACGCAAAACAGCCCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCA
ACGGCATTCATGAAGCTGAATGGCGCTCACTGAGAAATAGCGGACTCATCCATCTGGTGGCGATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAAGTGCGATGATGCGGCTGCATGTCAGTTTGCTGTGGATGCCTTTCGT
TTGCGGGATGTGTATTGCCGCGATTTATGCATGGCTGGCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCG
GTCTCAACGTCGCTCTCACGATGAGTGGCGTGCGTGTTACGGCGGTGCAGCGAATCCTTATCACCCTTGCTGCGGTATTA
ATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACATGTCATGGCTGGCGAAAATGGCTGACGGTGCAATGCTCGTTAGTCACTATGATGATTCCAGTTTCCG
CGTATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACTCTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTG
CCGCTGCTGTTTCTTACACTGTTTCTCACTACCTTTGTCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTT
CTGGCCACTGCAGCGGGCACTGGAATGGGCGGGCTCGAGCTGGATTGCTGTAAGTCAGACGGCGGCGGTCGTATTTAGTG
TTGGCCTTCTCCTTTGGATTTGCCGCCCGGTATTAAGCTGGCGAGCTCAACTCTATGCGGGAATTGCATTACTTGGCTTT
GGCTTTTTTACCCCACACGATGAGCGTTGGCGAGTTGATATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACG
GAATCACAACGCCCTGTTGTACGACACCGGCAGTGGCTGGCCTGAAGGCAGTTACGTTCGCTCTTTGATTGTTCCAATAC
TCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAATTCTCAGCCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGAGTCAGTCTGGTCCAAATTGGCAGGCTTGCCACACGGGAGAACA
GTGGGAATGGCAAGGACTGACGATGACGGCACTGTGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAACCCATGGATATTCAGAGCGATGTCATCATTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTT
TATCGAGCGGGTTTCCCCGCAAGTGGCCATTGCGTCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATGTGGATGCGGGGTCCGACTGGCTTGATACTGGCGAGGCGGGGCAAATCACTCTGACTTATCAAGCTCAA
TCCCGGCAGCTATCGACTCTGCGCCAAATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-173)

Competence protein (Competence)

(208-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.6

100

0.54
  comEC Vibrio parahaemolyticus RIMD 2210633

41.833

100

0.423
  comEC Vibrio campbellii strain DS40M4

40.741

100

0.413

Multiple sequence alignment