Detailed information NTG0040897

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: SSUD12_RS08070
• Genome accession: NC_017621
• Coordinates: 1619907..1620557 (-)
• Length: 216 a.a.
• NCBI ID: WP_014638459.1
• Uniprot ID: -
• Organism: Streptococcus suis D12
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1614907..1625557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSUD12_RS08045 (SSUD12_1622)	-	1615015..1615923 (+)	909	WP_014638455.1	neutral zinc metallopeptidase	-
SSUD12_RS08050 (SSUD12_1623)	-	1616132..1616683 (-)	552	WP_014638456.1	isoprenylcysteine carboxyl methyltransferase family protein	-
SSUD12_RS08065 (SSUD12_1626)	-	1618517..1619905 (-)	1389	WP_014638458.1	sensor histidine kinase	-
SSUD12_RS08070 (SSUD12_1627)	scnR	1619907..1620557 (-)	651	WP_014638459.1	response regulator transcription factor	Regulator
SSUD12_RS08075 (SSUD12_1628)	-	1620789..1621490 (+)	702	WP_014638460.1	CPBP family intramembrane glutamic endopeptidase	-
SSUD12_RS08080 (SSUD12_1629)	-	1621713..1622969 (+)	1257	WP_014638461.1	ISL3 family transposase	-

Sequence

Protein

• Length: 216 a.a.
• Molecular weight: 24756.87 Da
• Isoelectric Point: 4.7792

>NTDB_id=40897 SSUD12_RS08070 WP_014638459.1 1619907..1620557(-) (scnR) [Streptococcus suis D12]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDTIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide

• Length: 651 bp

>NTDB_id=40897 SSUD12_RS08070 WP_014638459.1 1619907..1620557(-) (scnR) [Streptococcus suis D12]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTAAGAGGAAAAGGAGATACAGATACCATCGAAATAGGAACAATTCTTATTCAAC
CAACTAGCGGAGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAGCGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGCCGTGTCTT
AGATAATCATATCAAAAATATACGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

• Response regulator receiver domain (Response_reg) (4-113)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (144-213)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	38.288	100	0.394
micA	Streptococcus pneumoniae Cp1015	36.889	100	0.384
vicR	Streptococcus mutans UA159	35.841	100	0.375