Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GO175_RS10140 Genome accession   NZ_CP046855
Coordinates   2016995..2019232 (+) Length   745 a.a.
NCBI ID   WP_158148205.1    Uniprot ID   -
Organism   Vibrio fluvialis strain F8658     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2011995..2024232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS10115 - 2012446..2013015 (-) 570 WP_154184592.1 PilZ domain-containing protein -
  GO175_RS10120 lolC 2013191..2014399 (+) 1209 WP_195714778.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GO175_RS10125 lolD 2014392..2015078 (+) 687 WP_020327790.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GO175_RS10130 lolE 2015079..2016323 (+) 1245 WP_047456912.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GO175_RS10135 - 2016456..2016986 (-) 531 WP_020327788.1 DUF2062 domain-containing protein -
  GO175_RS10140 comEC 2016995..2019232 (+) 2238 WP_158148205.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GO175_RS10145 msbA 2019265..2021013 (+) 1749 WP_047456910.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GO175_RS10150 lpxK 2021017..2022024 (+) 1008 WP_158148206.1 tetraacyldisaccharide 4'-kinase -
  GO175_RS10155 - 2022005..2022184 (+) 180 WP_020327784.1 Trm112 family protein -
  GO175_RS10160 kdsB 2022184..2022927 (+) 744 WP_154184588.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83560.96 Da        Isoelectric Point: 9.1241

>NTDB_id=408961 GO175_RS10140 WP_158148205.1 2016995..2019232(+) (comEC) [Vibrio fluvialis strain F8658]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMTTLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQQLHTFWQPKVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNFRSMLYRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHI
GMAFAIGYLIGTAMMRLHVRLLWMPFVSGMCIAAIYAWLAGFTLPTQRALLMCGLNVALTMSGMRVTAVQRILITLAAVL
IVTPFAPLSNSFWLSFLAVALVLYQLADRTTRHGWRKWLTVQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLALFLTTFVGDITWLWRGIDLSFWPLQRALEWAGSSWIAVSQTASVVFSVGLLLWICRPVLSWRAQLYAGIALLGF
GFFTPHDERWRVDILDVGHGLAVLIERNHNALLYDTGSGWPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKD
AETLLSPKWVVASQSGPNWQACHAGEQWEWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQPMDIQSDVIIVPHHGSKTSSTRQFIKRVSPQVAIASLAKGNQWQLPHRSVVARYVDAGSDWLDTGEAGQITLTYQAQ
SRQLSTLRHIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=408961 GO175_RS10140 WP_158148205.1 2016995..2019232(+) (comEC) [Vibrio fluvialis strain F8658]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCCCTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGACCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATCAATGGACAACAATTGCACACTTTTTGGCAGCCGAAGGTGCGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTC
AGTCAGGGTTGGGTTGCGAGAGTGAACGTTAAACCTCAGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTTCGCAGTAT
GTTGTACCGCCAAATCAAAACATGGACGCAAAACAGCCCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCA
ACGGCATTCATGAAGCTGAATGGCGCTCACTGAGAAATAGCGGACTCATCCATCTGGTGGCGATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAACTGCGATGATGCGGCTGCATGTCCGTTTGCTGTGGATGCCTTTCGT
TTCCGGGATGTGTATTGCCGCGATTTATGCATGGCTGGCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCG
GTCTCAACGTCGCTCTCACGATGAGTGGCATGCGTGTTACGGCGGTGCAGCGAATCCTTATCACCCTTGCTGCGGTATTA
ATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACACGTCATGGCTGGCGAAAATGGCTGACGGTGCAATGCTCGTTAGTCACTATGATGATTCCAGTTTCCG
CGTATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACTCTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTC
CCGCTGCTGTTTCTCGCACTGTTTCTCACTACCTTTGTCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTT
CTGGCCACTGCAGCGGGCACTGGAATGGGCGGGATCGAGCTGGATTGCTGTAAGTCAGACGGCTTCGGTCGTATTTAGTG
TTGGCCTTCTCCTTTGGATTTGCCGCCCGGTATTAAGCTGGCGAGCTCAACTCTATGCGGGAATTGCATTACTTGGCTTT
GGCTTTTTTACCCCACACGATGAGCGTTGGCGAGTTGACATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACG
GAATCACAACGCCCTGTTGTACGACACTGGCAGTGGCTGGCCTGAAGGCAGTTACGTTCGCTCTTTGATTGTTCCAATAC
TCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAATTCTCAGCCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGAGTCAGTCTGGTCCAAATTGGCAGGCTTGCCACGCGGGAGAGCA
GTGGGAATGGCAAGGACTGACGATGACGGCACTGTGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAACCCATGGATATTCAGAGCGATGTCATCATTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTT
TATCAAGCGGGTTTCCCCGCAAGTGGCCATTGCGTCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATGTGGATGCGGGGTCCGACTGGCTTGATACTGGCGAGGCGGGGCAAATCACTCTGACTTATCAAGCTCAA
TCCCGGCAGCTATCGACTCTGCGCCACATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-173)

Competence protein (Competence)

(208-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.6

100

0.54
  comEC Vibrio parahaemolyticus RIMD 2210633

42.098

100

0.426
  comEC Vibrio campbellii strain DS40M4

41.138

100

0.417

Multiple sequence alignment