Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GO175_RS06280 Genome accession   NZ_CP046855
Coordinates   1203118..1203768 (-) Length   216 a.a.
NCBI ID   WP_154184804.1    Uniprot ID   -
Organism   Vibrio fluvialis strain F8658     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198118..1208768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO175_RS06270 uvrA 1199161..1201983 (-) 2823 WP_044364108.1 excinuclease ABC subunit UvrA -
  GO175_RS06275 galU 1202121..1202990 (-) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GO175_RS06280 qstR 1203118..1203768 (-) 651 WP_154184804.1 LuxR C-terminal-related transcriptional regulator Regulator
  GO175_RS06285 ssb 1204051..1204581 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  GO175_RS06290 csrD 1204717..1206711 (+) 1995 WP_020433244.1 RNase E specificity factor CsrD -
  GO175_RS06295 - 1206719..1208167 (+) 1449 WP_154184803.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24932.72 Da        Isoelectric Point: 9.6575

>NTDB_id=408947 GO175_RS06280 WP_154184804.1 1203118..1203768(-) (qstR) [Vibrio fluvialis strain F8658]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLRTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=408947 GO175_RS06280 WP_154184804.1 1203118..1203768(-) (qstR) [Vibrio fluvialis strain F8658]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCGGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGCCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTTGGCAAACGTTTGCGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGTCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGGGAA
CTACAGATTTTGCGCAGTCTAAAAACGGGGGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAGTTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCTTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

70.233

99.537

0.699
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment