Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPX94_RS08755 Genome accession   NZ_CP046848
Coordinates   1871796..1873160 (+) Length   454 a.a.
NCBI ID   WP_154115895.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain F8054     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1866796..1878160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX94_RS08750 uvrB 1869434..1871464 (+) 2031 WP_154115434.1 excinuclease ABC subunit UvrB -
  GPX94_RS08755 luxO 1871796..1873160 (+) 1365 WP_154115895.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPX94_RS08760 luxU 1873167..1873505 (+) 339 WP_154115435.1 quorum-sensing phosphorelay protein LuxU -
  GPX94_RS08765 - 1873498..1874388 (-) 891 WP_078924971.1 YvcK family protein -
  GPX94_RS08770 moaA 1874692..1875681 (+) 990 WP_195707268.1 GTP 3',8-cyclase MoaA -
  GPX94_RS08775 moaB 1875734..1876246 (+) 513 WP_078924970.1 molybdenum cofactor biosynthesis protein B -
  GPX94_RS08780 moaC 1876258..1876737 (+) 480 WP_154115437.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPX94_RS08785 moaD 1876734..1876979 (+) 246 WP_078924968.1 molybdopterin synthase sulfur carrier subunit -
  GPX94_RS08790 moaE 1876985..1877434 (+) 450 WP_078924967.1 molybdopterin synthase catalytic subunit MoaE -
  GPX94_RS08795 - 1877588..1878004 (+) 417 WP_078924966.1 CBS domain-containing protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50602.88 Da        Isoelectric Point: 6.2949

>NTDB_id=408879 GPX94_RS08755 WP_154115895.1 1871796..1873160(+) (luxO) [Vibrio cincinnatiensis strain F8054]
MVEDTASVAALYRSYLTPLEIDITIVGTGRAAIESLNRRKPDLILLDLRLPDMTGMDVLHAVKERSADVPIIFMTAHGSI
DTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKLKNNPSHSTNSNYQGFIGSSQTMQAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGEKPFIAINCAAIPKDLIESELFGHVKGAFTGAAVDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMHSVDVRFVCATNRDPWKEVQAGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
HMSKEEGKEFVRLSPEVIERFKHYEWPGNVRQLQNVLRNVVVLNHGQEITLPMLPPPLNLPRIQERSVAPQPVDTGLSVH
DIFPLWMTEKQAIEKAIEACDGNIPRAASYLDVSPSTIYRKLQAWNEKEQEKEQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=408879 GPX94_RS08755 WP_154115895.1 1871796..1873160(+) (luxO) [Vibrio cincinnatiensis strain F8054]
ATGGTGGAGGATACCGCTTCGGTTGCGGCGTTGTATCGTTCTTATCTCACTCCATTAGAGATTGATATTACCATTGTTGG
AACAGGACGCGCTGCGATTGAAAGCCTTAATCGACGAAAACCCGACTTAATCTTATTGGATTTACGTCTGCCAGATATGA
CGGGTATGGATGTCTTGCATGCGGTTAAAGAACGTTCAGCGGACGTTCCTATCATTTTTATGACGGCTCACGGTTCTATT
GATACCGCCGTCGAAGCCATGCGGTATGGTGCACAGGATTTTTTAATTAAACCTTGTGAAGCGGATCGTCTGCGAGTTAC
CGTGAATAATGCGATACGCAAAGCCTCCAAATTAAAAAATAACCCCAGTCATTCAACCAATTCTAACTATCAAGGCTTTA
TTGGTAGTAGTCAGACGATGCAAGCGGTTTATCGAACGATTGATTCTGCTGCCAGCAGTAAAGCGAGCATATTTATTACA
GGGGAAAGTGGCACAGGAAAAGAAGTATGTGCAGAAGCCATTCATGCGGCCAGTAAACGAGGTGAGAAACCTTTTATTGC
GATCAACTGCGCGGCGATTCCCAAAGATTTGATTGAAAGTGAATTGTTCGGTCATGTGAAAGGAGCCTTTACAGGCGCGG
CCGTGGATAGACAAGGGGCTGCTGAGCTAGCCGATGGGGGGACTCTGTTTTTAGATGAATTGTGCGAAATGGATTTGGAT
TTACAAACCAAATTGTTGCGCTTTATTCAAACCGGCACCTTTCAAAAAGTGGGTTCATCAAAAATGCACAGTGTGGATGT
TCGCTTTGTCTGTGCGACTAACCGCGACCCATGGAAAGAAGTACAAGCAGGGCGGTTTCGTGAAGATTTGTACTACCGGT
TGTATGTGATTCCTCTCCATTTACCGCCATTAAGAGAGCGGGGAGAAGATGTGATTGAAATTGCTTACTCGCTGCTGGGA
CATATGTCTAAAGAAGAAGGAAAAGAATTTGTTCGTCTTTCGCCAGAAGTGATAGAGCGTTTTAAACATTATGAGTGGCC
GGGAAATGTGCGCCAATTGCAGAATGTGTTACGCAATGTGGTGGTGCTTAATCATGGGCAGGAGATTACTTTACCTATGC
TGCCGCCGCCTTTAAATTTACCTCGAATTCAAGAGCGTTCGGTTGCTCCTCAGCCAGTGGATACTGGGCTTTCTGTGCAT
GACATCTTTCCGTTATGGATGACAGAAAAGCAGGCCATAGAAAAAGCCATCGAAGCGTGTGATGGCAACATCCCACGAGC
AGCCAGCTATTTAGACGTTAGCCCTTCAACCATCTATCGCAAGTTACAAGCATGGAATGAGAAAGAACAAGAGAAGGAGC
AATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.444

98.238

0.859
  pilR Pseudomonas aeruginosa PAK

38.876

98.018

0.381
  pilR Acinetobacter baumannii strain A118

35.608

100

0.368

Multiple sequence alignment