Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY12_RS09955 Genome accession   NZ_CP046846
Coordinates   2182980..2185223 (-) Length   747 a.a.
NCBI ID   WP_199250761.1    Uniprot ID   -
Organism   Vibrio mimicus strain F9458     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2177980..2190223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY12_RS09930 - 2177981..2179212 (+) 1232 Protein_1885 ABC transporter substrate-binding protein -
  GPY12_RS09935 kdsB 2179276..2180031 (-) 756 WP_148546257.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPY12_RS09940 - 2180031..2180210 (-) 180 WP_000350065.1 Trm112 family protein -
  GPY12_RS09945 lpxK 2180191..2181198 (-) 1008 WP_187377568.1 tetraacyldisaccharide 4'-kinase -
  GPY12_RS09950 msbA 2181201..2182949 (-) 1749 WP_000052159.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY12_RS09955 comEC 2182980..2185223 (-) 2244 WP_199250761.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY12_RS09960 - 2185232..2185762 (+) 531 WP_005515139.1 DUF2062 domain-containing protein -
  GPY12_RS09965 lolE 2185935..2187179 (-) 1245 WP_005523477.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY12_RS09970 lolD 2187180..2187866 (-) 687 WP_001061285.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY12_RS09975 lolC 2187859..2189067 (-) 1209 WP_187377566.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPY12_RS09980 - 2189243..2189818 (+) 576 WP_000999599.1 hypothetical protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84232.38 Da        Isoelectric Point: 9.1288

>NTDB_id=408827 GPY12_RS09955 WP_199250761.1 2182980..2185223(-) (comEC) [Vibrio mimicus strain F9458]
MTLLSNYWSLISFSITVLSAPYWPWMPTWGWAWFCLILTGLLGYHRTSRKFLGFALAILTIVLHGNLMRDQSNTLYQAGP
DIIIKGKVDSFFAKTRYAYEGLVLIHEVNGQTLNSLMRPRIRLVAPIPLQPNDQFEFSVTLKPVVGRLNETGFDLEAHYM
AHSLVARASVKPNTAYQIVQQSGLRSSLLFQLDALTHTSPFQGLIRALTFGERSGIDEQEWQVLRNSGLIHLVAISGLHI
GIAFSFGYLLGAGVMRLHAKLLWSPFVFGALLAVLYAWLAGFTIPTQRALIMCLLNVALVILGFPLSALKRILLTLCAVL
LWSPFASLSNSFWMSFLAVAIVLYQLASQGKRKAWWKALLLAQISLVCLMAPVTAYFFGGLSITAVLYNLVFIPWFSVVI
VPALFLGLALTVTIPNWAALYWPWVDWAFLPLDWALQFADVGWVVIPQSIQGLITALVVLSLLYRVMSLRACALSLSIVG
LWWWFPSITPLWRMDVLDVGHGLAIVIEQNDRAIIYDTGSSWSGGSYAQNVIEPILQQRGIRRLDGLILSHLDNDHAGDW
QNLAKRWQPSWIRTSQVGVEFVPCIRGESWQWQSLHFDVLWPPQLVSRAYNQHSCVIRMTDAQSNHSVLLSGDVTAMGEW
LLARDGALLQSDVMIVPHHGSKTSSTAEFITKVEPRLAIASLAKDNRWNLPNPQVVERYQNQQAQWLDTGQKGQISLFFY
QEQMGWFAQRGLGWEPWYRHMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=408827 GPY12_RS09955 WP_199250761.1 2182980..2185223(-) (comEC) [Vibrio mimicus strain F9458]
ATGACTCTCTTGTCGAATTACTGGTCGCTAATTTCGTTTTCGATCACCGTGCTTTCTGCTCCTTATTGGCCGTGGATGCC
AACATGGGGCTGGGCTTGGTTTTGCCTTATTTTGACGGGTTTGCTCGGTTATCACCGTACAAGCCGAAAATTCCTTGGCT
TCGCGTTGGCCATACTAACTATCGTGCTACATGGCAACCTTATGCGAGATCAATCCAACACGCTCTATCAAGCAGGCCCG
GATATTATCATAAAAGGTAAGGTTGACAGCTTTTTTGCGAAAACTCGTTACGCTTATGAGGGTTTAGTCTTAATTCACGA
GGTGAATGGTCAAACCTTAAACAGCCTCATGAGGCCTCGTATTCGTCTAGTTGCACCTATTCCGTTGCAGCCCAATGATC
AATTCGAATTCTCTGTAACGCTTAAACCTGTTGTTGGTCGACTCAATGAAACGGGCTTTGATTTGGAAGCTCATTACATG
GCCCATTCTTTGGTCGCGCGAGCCAGTGTTAAACCCAACACTGCTTATCAAATTGTGCAACAGAGTGGCCTAAGGTCAAG
TTTGTTATTTCAACTCGATGCTTTGACTCACACCAGCCCGTTTCAAGGGCTCATACGAGCGCTAACATTTGGGGAGAGAA
GTGGTATTGATGAGCAAGAGTGGCAGGTACTGCGTAACAGCGGCTTAATCCACTTAGTTGCGATTTCTGGTCTGCATATT
GGTATCGCGTTCAGTTTCGGCTATTTACTGGGAGCAGGCGTGATGCGCTTGCATGCCAAGCTGCTTTGGTCCCCTTTTGT
GTTTGGCGCTTTGCTTGCGGTGTTGTATGCATGGCTAGCAGGTTTCACCATACCGACTCAACGTGCGCTAATCATGTGCT
TACTCAATGTGGCATTGGTGATCTTGGGTTTTCCTCTTTCGGCTTTAAAGCGGATTTTGCTTACCTTATGCGCCGTTTTA
CTTTGGTCGCCATTCGCGTCACTCTCAAATAGCTTTTGGATGTCGTTTTTAGCTGTCGCGATTGTGCTTTATCAATTAGC
CAGTCAGGGTAAACGCAAAGCTTGGTGGAAAGCTCTATTGCTAGCACAAATCTCCCTCGTCTGTTTAATGGCACCTGTTA
CAGCATACTTTTTCGGCGGGTTAAGTATTACGGCGGTTTTGTACAATTTGGTTTTTATACCGTGGTTCTCCGTGGTGATC
GTTCCCGCTTTGTTTTTGGGCTTGGCACTCACAGTAACAATCCCCAATTGGGCTGCGCTTTATTGGCCTTGGGTGGATTG
GGCTTTTCTGCCACTTGATTGGGCGCTGCAATTTGCGGATGTGGGTTGGGTAGTGATTCCACAAAGTATACAAGGCCTAA
TTACTGCGTTAGTGGTGCTCAGTTTGCTGTATCGAGTGATGAGCCTACGAGCCTGTGCCTTATCGTTAAGCATCGTTGGC
TTATGGTGGTGGTTTCCTTCCATTACACCGCTTTGGCGTATGGATGTGTTGGATGTGGGGCATGGCTTAGCGATAGTGAT
TGAGCAAAATGACAGGGCTATTATCTACGATACGGGCAGCAGTTGGTCGGGAGGAAGTTACGCACAAAACGTCATTGAAC
CGATTTTGCAGCAGCGTGGAATTCGTCGATTGGATGGCTTGATTTTGAGCCATCTCGATAACGATCATGCGGGCGATTGG
CAAAATCTAGCCAAACGTTGGCAACCAAGTTGGATACGCACAAGCCAAGTTGGTGTGGAATTTGTTCCTTGTATACGTGG
TGAAAGTTGGCAATGGCAATCTCTACATTTCGATGTGTTATGGCCGCCGCAACTGGTCAGCCGAGCTTACAATCAACATT
CGTGTGTGATTCGTATGACCGATGCTCAGTCTAACCATTCAGTGCTGCTTTCGGGTGATGTCACCGCAATGGGGGAGTGG
TTGCTCGCACGAGATGGGGCATTACTGCAAAGTGATGTGATGATAGTTCCGCACCACGGCAGTAAAACCTCATCAACCGC
TGAGTTCATCACGAAAGTCGAACCACGACTGGCGATTGCGTCACTGGCCAAAGACAACCGCTGGAATTTGCCTAACCCGC
AAGTGGTGGAACGTTATCAAAACCAGCAAGCTCAGTGGCTAGATACGGGGCAAAAAGGGCAGATTAGCCTGTTTTTCTAT
CAAGAACAGATGGGTTGGTTTGCCCAGCGCGGGCTTGGCTGGGAGCCTTGGTATAGGCATATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-464)

Domain of unknown function (DUF4131) (DUF4131)

(24-172)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

82.329

100

0.823
  comEC Vibrio campbellii strain DS40M4

42.042

100

0.424
  comEC Vibrio parahaemolyticus RIMD 2210633

41.036

100

0.414

Multiple sequence alignment