Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY04_RS13825 Genome accession   NZ_CP046844
Coordinates   2994333..2994977 (-) Length   214 a.a.
NCBI ID   WP_001188316.1    Uniprot ID   Q9KUW3
Organism   Vibrio cholerae C6706     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2989333..2999977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY04_RS13815 uvrA 2990310..2993132 (-) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -
  GPY04_RS13820 galU 2993288..2994160 (-) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY04_RS13825 qstR 2994333..2994977 (-) 645 WP_001188316.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY04_RS13830 ssb 2995269..2995802 (+) 534 WP_000168289.1 single-stranded DNA-binding protein Machinery gene
  GPY04_RS13835 csrD 2995980..2997938 (+) 1959 WP_000216141.1 RNase E specificity factor CsrD -
  GPY04_RS13840 - 2997951..2999390 (+) 1440 WP_000743253.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24736.58 Da        Isoelectric Point: 9.6461

>NTDB_id=408794 GPY04_RS13825 WP_001188316.1 2994333..2994977(-) (qstR) [Vibrio cholerae C6706]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=408794 GPY04_RS13825 WP_001188316.1 2994333..2994977(-) (qstR) [Vibrio cholerae C6706]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAGTTGAATCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTAAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.523
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523

Multiple sequence alignment