Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY01_RS11580 Genome accession   NZ_CP046839
Coordinates   1560311..1560955 (+) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain 2011EL-1271     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1555311..1565955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS11565 - 1555898..1557337 (-) 1440 WP_033930069.1 PilN domain-containing protein -
  GPY01_RS11570 csrD 1557350..1559308 (-) 1959 WP_230079065.1 RNase E specificity factor CsrD -
  GPY01_RS11575 ssb 1559486..1560019 (-) 534 WP_000168289.1 single-stranded DNA-binding protein Machinery gene
  GPY01_RS11580 qstR 1560311..1560955 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY01_RS11585 galU 1561128..1562000 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY01_RS11590 uvrA 1562156..1564978 (+) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=408684 GPY01_RS11580 WP_001188318.1 1560311..1560955(+) (qstR) [Vibrio cholerae strain 2011EL-1271]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=408684 GPY01_RS11580 WP_001188318.1 1560311..1560955(+) (qstR) [Vibrio cholerae strain 2011EL-1271]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTAAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTAGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519

Multiple sequence alignment