Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY01_RS04845 Genome accession   NZ_CP046839
Coordinates   40887..43016 (+) Length   709 a.a.
NCBI ID   WP_001928008.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2011EL-1271     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 35887..48016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS04815 - 36236..36811 (-) 576 WP_000999601.1 PilZ domain-containing protein -
  GPY01_RS04820 lolC 36987..38195 (+) 1209 WP_000468904.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPY01_RS04825 lolD 38188..38874 (+) 687 WP_001061290.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY01_RS04830 lolE 38875..40119 (+) 1245 WP_000493012.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY01_RS04840 - 40234..40764 (-) 531 WP_001881633.1 DUF2062 domain-containing protein -
  GPY01_RS04845 comEC 40887..43016 (+) 2130 WP_001928008.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY01_RS04850 msbA 43047..44795 (+) 1749 WP_000052155.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY01_RS04855 lpxK 44798..45805 (+) 1008 WP_002153853.1 tetraacyldisaccharide 4'-kinase -
  GPY01_RS04860 - 45786..45965 (+) 180 WP_000350068.1 Trm112 family protein -
  GPY01_RS04865 kdsB 45965..46723 (+) 759 WP_000011327.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79993.31 Da        Isoelectric Point: 7.7984

>NTDB_id=408665 GPY01_RS04845 WP_001928008.1 40887..43016(+) (comEC) [Vibrio cholerae strain 2011EL-1271]
MVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVLYQAGPDIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNKMTR
PRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYMAQSVVARAVVKPDTAYQIVQESGIRSSLFFELEQLTHT
SPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAISGLHIGIAFSVGYFLGLGMMRLHAQLLWSPFVCGALLAVLYAW
LAGFTLPTQRALIMCLLNVALLMLAFPLSALKRILLTLVAVLLWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVWWKA
LLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWPSVAAAYWPWVDWTFLPLDWALQF
ADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLLLGMMGLWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDT
GSSWPGGSYVQSVIEPMLQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSLHFT
VLWPPQSVSRAYNQHSCVIRMTDTQSNHSVLLSGDVTAMGEWLLARDGAQLQSEVMIVPHHGSKTSSTAEFIAQVNPKLA
IASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQISLFFYPDQLDWFTQRSLGWQPWYRQMLRKGVE

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=408665 GPY01_RS04845 WP_001928008.1 40887..43016(+) (comEC) [Vibrio cholerae strain 2011EL-1271]
ATGGTTTTGCTCGGTTATCACCGAGTTGGCCGTCAATTCCTTGGCTTCGTGGCTGCCATACTAACCATTGTGCTACAGGG
CAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAGGGCCGGATATTATCATAAAAGGCCGTGTTGACAGCTTTT
TTACGCAAACTCGTTACGCTTATGAGGGTTTTGTCCTCATTCATGAAGTGAATGGACAAACCTTAAACAAAATGACTCGC
CCTCGCATACGTTTAAGTGCCCCTTTACTGTTACAACCCAATGACCGCGTCGAATTTTCGGTAACTCTCAAGCCGATAGT
GGGTCGACTCAACCAAACCGGCTTTGATTTAGAAGCGCATTACATGGCGCAATCTGTCGTCGCACGAGCGGTCGTAAAAC
CTGACACTGCTTATCAAATTGTGCAAGAGAGTGGCATAAGGTCAAGTTTGTTTTTTGAGCTAGAGCAATTAACGCATACC
AGCCCATACCAAGGATTGATCTTAGCCCTGACGTTTGGCGAGCGAAAAGGTATTGATGAGCAAGAGTGGCAAGCCTTACG
CAATAGTGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGCACATTGGTATCGCTTTTAGCGTGGGGTATTTTCTCGGGC
TCGGCATGATGCGTCTTCATGCTCAGTTATTGTGGTCCCCTTTTGTGTGTGGGGCTTTACTGGCGGTGCTCTATGCTTGG
CTGGCCGGATTTACGTTGCCTACTCAGCGTGCATTGATTATGTGCTTACTCAATGTGGCGTTGCTCATGTTGGCTTTTCC
TCTTTCCGCGCTCAAGCGGATTCTACTCACCTTAGTCGCGGTCTTGCTTTGGTCGCCATTCGCCTCACTTTCAAACAGTT
TCTGGATGTCGTTTTTGGCGGTCGCGATTGTTCTCTACCAATTAGCCAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCT
CTGCTTTGGGCGCAGGTGTTCCTCGTCTGTTTAATGGCGCCGGTCACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGC
AGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGGTGATTGTCCCAGCTTTGTTTTTGGGTCTATTACTCATGG
TGGTATGGCCTAGTGTGGCCGCCGCTTACTGGCCTTGGGTGGATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTT
GCCGATGTAGGCTGGTGGGTGGTACCCAGCAAAGTACAAGGTGTAGTCGCAGCGAGTGTGGCCATCCTCTTGCTTTATCG
ATTTATGAGCCTAAAAGCCTGCAGCTTATTATTGGGTATGATGGGCTTATGGTGGTGGTTTCCCTCCCTCACTCCACTTT
GGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATTGTGATTGAGCAAGATGAGCGAGCAATTGTCTACGATACA
GGCAGCAGTTGGCCGGGAGGCAGCTATGTGCAAAGCGTGATTGAGCCTATGCTCCAACAGCGGGGGCTACGCCAAGTGGA
TGGAGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTGATTGGCAAGGTTTAGCTGAGCGCTGGCAACCTAATTGGA
TTCGTGCCAGCCAACTCGGGACAGAGTTTATGCCTTGTATCCGTGGTGAAAGCTGGCAGTGGCAATCTCTCCATTTTACG
GTGTTATGGCCACCACAATCGGTTAGCCGAGCGTACAACCAGCATTCGTGTGTGATTCGTATGACCGATACTCAGTCTAA
CCATTCTGTACTGCTCTCCGGGGATGTCACAGCCATGGGGGAGTGGCTGCTTGCTCGCGACGGAGCGCAACTGCAAAGTG
AGGTGATGATCGTGCCGCACCACGGCAGTAAAACGTCGTCCACCGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCG
ATTGCTTCTGTGGCGAAAGATAACCGCTGGAATTTGCCTAATCCGCAAGTCGTGGCACGTTATCAAGCTCAGCAAGTTGA
GTGGCTAGATACTGGACACGCTGGGCAAATTAGCCTCTTTTTCTATCCAGATCAGCTGGATTGGTTTACCCAGCGTAGCC
TTGGCTGGCAGCCTTGGTATAGGCAGATGCTGCGTAAAGGAGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(6-135)

Metallo-beta-lactamase superfamily (Lactamase_B)

(461-641)

Competence protein (Competence)

(170-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

99.295

100

0.993
  comEC Vibrio parahaemolyticus RIMD 2210633

41.573

100

0.417
  comEC Vibrio campbellii strain DS40M4

41.443

99.718

0.413

Multiple sequence alignment