Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY41_RS19380 Genome accession   NZ_CP046835
Coordinates   2434278..2434925 (+) Length   215 a.a.
NCBI ID   WP_017420064.1    Uniprot ID   A0A2S3SZL1
Organism   Vibrio vulnificus strain 07-2444     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2429278..2439925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY41_RS19365 - 2429816..2431276 (-) 1461 WP_158123871.1 MSHA biogenesis protein MshI -
  GPY41_RS19370 csrD 2431289..2433286 (-) 1998 WP_026130604.1 RNase E specificity factor CsrD -
  GPY41_RS19375 ssb 2433439..2433978 (-) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  GPY41_RS19380 qstR 2434278..2434925 (+) 648 WP_017420064.1 response regulator transcription factor Regulator
  GPY41_RS19385 galU 2435111..2435983 (+) 873 WP_017420065.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY41_RS19390 uvrA 2436126..2438948 (+) 2823 WP_026050227.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24730.69 Da        Isoelectric Point: 9.8565

>NTDB_id=408644 GPY41_RS19380 WP_017420064.1 2434278..2434925(+) (qstR) [Vibrio vulnificus strain 07-2444]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPNRLTTEELIGFGQCKAIFYRDTTIADMTKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=408644 GPY41_RS19380 WP_017420064.1 2434278..2434925(+) (qstR) [Vibrio vulnificus strain 07-2444]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACTGTATT
AGCGAAACAGATTCAAATGGAAATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAATCGCA
TCTTATTGATTGATCATCAGCAACATAAGGTGCTGCTGAGAGAGATTAAAAACCTACCGCTAATATGGAAGGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAACCGATTGACGACTGAGGAACTGATTGGCTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCACCATTGCAGACATGACCAAAGGACTAAATTCGGTGATTAATGGTAAGAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGCTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGCTACGCTGCGTGCAGTCTGGCAAATCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGCGAGTTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTTTCCGTGAAGAATCGTGTCCAAGCTGCTGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S3SZL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

46.729

99.535

0.465

Multiple sequence alignment