Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY16_RS02390 Genome accession   NZ_CP046832
Coordinates   496763..497410 (-) Length   215 a.a.
NCBI ID   WP_017420064.1    Uniprot ID   A0A2S3SZL1
Organism   Vibrio vulnificus strain 06-2410     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 491763..502410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS02380 uvrA 492740..495562 (-) 2823 WP_026050227.1 excinuclease ABC subunit UvrA -
  GPY16_RS02385 galU 495705..496577 (-) 873 WP_158104949.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY16_RS02390 qstR 496763..497410 (-) 648 WP_017420064.1 response regulator transcription factor Regulator
  GPY16_RS02395 ssb 497710..498249 (+) 540 WP_011079389.1 single-stranded DNA-binding protein Machinery gene
  GPY16_RS02400 csrD 498402..500399 (+) 1998 WP_026130604.1 RNase E specificity factor CsrD -
  GPY16_RS02405 - 500412..501872 (+) 1461 WP_158104950.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24730.69 Da        Isoelectric Point: 9.8565

>NTDB_id=408580 GPY16_RS02390 WP_017420064.1 496763..497410(-) (qstR) [Vibrio vulnificus strain 06-2410]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPNRLTTEELIGFGQCKAIFYRDTTIADMTKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=408580 GPY16_RS02390 WP_017420064.1 496763..497410(-) (qstR) [Vibrio vulnificus strain 06-2410]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACTGTATT
AGCCAAACAGATTCAAATGGAAATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAATCGCA
TCTTATTGATTGATCATCAGCAACATAAGGTGCTACTGAGAGAGATTAAAAACCTACCGCTAATATGGAAGGGGTTTGAA
ACGGTCCTATGTAATGTACCTAACCGATTGACGACTGAGGAACTGATTGGCTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACAACCATTGCAGACATGACCAAAGGACTAAATTCGGTGATTAATGGTAAGAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGCTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGCTACGCTGCGTGCAGTCTGGCAAATCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGCGAGTTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAACTTTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S3SZL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

46.729

99.535

0.465

Multiple sequence alignment