Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GPY13_RS13240 | Genome accession | NZ_CP046823 |
| Coordinates | 2872562..2873152 (-) | Length | 196 a.a. |
| NCBI ID | WP_000135848.1 | Uniprot ID | A0A2J9UZ41 |
| Organism | Vibrio mimicus strain 06-2455 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2867562..2878152
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPY13_RS13220 | aroB | 2868489..2869574 (-) | 1086 | WP_000439800.1 | 3-dehydroquinate synthase | - |
| GPY13_RS13225 | aroK | 2869602..2870126 (-) | 525 | WP_000818614.1 | shikimate kinase AroK | - |
| GPY13_RS13230 | pilQ | 2870313..2872028 (-) | 1716 | WP_032470621.1 | type IV pilus secretin PilQ | Machinery gene |
| GPY13_RS13235 | pilP | 2872054..2872572 (-) | 519 | WP_000794696.1 | pilus assembly protein PilP | Machinery gene |
| GPY13_RS13240 | pilO | 2872562..2873152 (-) | 591 | WP_000135848.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GPY13_RS13245 | pilN | 2873145..2873729 (-) | 585 | WP_000903043.1 | PilN domain-containing protein | Machinery gene |
| GPY13_RS13250 | pilM | 2873719..2874735 (-) | 1017 | WP_000520765.1 | type IV pilus assembly protein PilM | Machinery gene |
| GPY13_RS13255 | - | 2874877..2877354 (+) | 2478 | WP_000668749.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22921.33 Da Isoelectric Point: 4.4232
>NTDB_id=408467 GPY13_RS13240 WP_000135848.1 2872562..2873152(-) (pilO) [Vibrio mimicus strain 06-2455]
MASFQELELDEIAEWPLLPQLLVILLLMLLIQGAGYWFYLMPKQDEIVALKQEEETVKATLRIKANKVAALPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDNSLTFTRIDWGERQTQEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVKAYTYQFKQEVEDEK
MASFQELELDEIAEWPLLPQLLVILLLMLLIQGAGYWFYLMPKQDEIVALKQEEETVKATLRIKANKVAALPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDNSLTFTRIDWGERQTQEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVKAYTYQFKQEVEDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=408467 GPY13_RS13240 WP_000135848.1 2872562..2873152(-) (pilO) [Vibrio mimicus strain 06-2455]
ATGGCTAGTTTTCAAGAATTAGAATTGGATGAAATTGCAGAATGGCCACTGCTGCCTCAGCTGCTCGTTATCTTGTTGTT
GATGTTGCTAATTCAAGGCGCTGGCTATTGGTTTTATCTTATGCCCAAGCAAGATGAAATTGTGGCGTTAAAACAAGAAG
AGGAAACGGTAAAAGCGACCTTAAGGATCAAAGCCAATAAAGTAGCTGCGTTACCGCAGATCCAAGCTCAGTTAGATGAA
TTGAAAGAGCGTTATGATTTTCTATTGCGACAATTACCAGTTCAAAAAGAGCTGGCCAGCATGCTTGCCTCCGTTAACCA
ACTTGGTCTCGATAATTCGCTGACCTTTACGCGTATCGACTGGGGTGAGCGTCAAACACAAGAATTCCTCTACCGTCTAC
CGCTCAATATTGAACTGACGGGTAACTATCACGATATCGGCGATTTTTCAGAGGCGATTGCCAAACTACCGCGCATCATC
AATTTCGATGATGTGGATTGGCAGCGGGTGAGCCAAGAAAGTAGCACTCTACACTTCCGGGTAAAAGCTTACACCTACCA
GTTTAAACAGGAGGTTGAAGATGAAAAATAA
ATGGCTAGTTTTCAAGAATTAGAATTGGATGAAATTGCAGAATGGCCACTGCTGCCTCAGCTGCTCGTTATCTTGTTGTT
GATGTTGCTAATTCAAGGCGCTGGCTATTGGTTTTATCTTATGCCCAAGCAAGATGAAATTGTGGCGTTAAAACAAGAAG
AGGAAACGGTAAAAGCGACCTTAAGGATCAAAGCCAATAAAGTAGCTGCGTTACCGCAGATCCAAGCTCAGTTAGATGAA
TTGAAAGAGCGTTATGATTTTCTATTGCGACAATTACCAGTTCAAAAAGAGCTGGCCAGCATGCTTGCCTCCGTTAACCA
ACTTGGTCTCGATAATTCGCTGACCTTTACGCGTATCGACTGGGGTGAGCGTCAAACACAAGAATTCCTCTACCGTCTAC
CGCTCAATATTGAACTGACGGGTAACTATCACGATATCGGCGATTTTTCAGAGGCGATTGCCAAACTACCGCGCATCATC
AATTTCGATGATGTGGATTGGCAGCGGGTGAGCCAAGAAAGTAGCACTCTACACTTCCGGGTAAAAGCTTACACCTACCA
GTTTAAACAGGAGGTTGAAGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
92.857 |
100 |
0.929 |
| pilO | Vibrio campbellii strain DS40M4 |
70.899 |
96.429 |
0.684 |