Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPY13_RS13235 Genome accession   NZ_CP046823
Coordinates   2872054..2872572 (-) Length   172 a.a.
NCBI ID   WP_000794696.1    Uniprot ID   -
Organism   Vibrio mimicus strain 06-2455     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2867054..2877572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS13220 aroB 2868489..2869574 (-) 1086 WP_000439800.1 3-dehydroquinate synthase -
  GPY13_RS13225 aroK 2869602..2870126 (-) 525 WP_000818614.1 shikimate kinase AroK -
  GPY13_RS13230 pilQ 2870313..2872028 (-) 1716 WP_032470621.1 type IV pilus secretin PilQ Machinery gene
  GPY13_RS13235 pilP 2872054..2872572 (-) 519 WP_000794696.1 pilus assembly protein PilP Machinery gene
  GPY13_RS13240 pilO 2872562..2873152 (-) 591 WP_000135848.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY13_RS13245 pilN 2873145..2873729 (-) 585 WP_000903043.1 PilN domain-containing protein Machinery gene
  GPY13_RS13250 pilM 2873719..2874735 (-) 1017 WP_000520765.1 type IV pilus assembly protein PilM Machinery gene
  GPY13_RS13255 - 2874877..2877354 (+) 2478 WP_000668749.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18940.88 Da        Isoelectric Point: 9.9915

>NTDB_id=408466 GPY13_RS13235 WP_000794696.1 2872054..2872572(-) (pilP) [Vibrio mimicus strain 06-2455]
MKNNPAWLSLITLFLLVGCKANQEDLAGYVAQVEREARKEVTKLKPILAFEVTAYQQHSGREPFVLPKEALVQNQPVAKS
DCWQPSPRAKNGPLERYPLSQLRLKGVMSSGGSISALVQTPAGNVVKVKAGQYVGNNNGKITRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408466 GPY13_RS13235 WP_000794696.1 2872054..2872572(-) (pilP) [Vibrio mimicus strain 06-2455]
ATGAAAAATAACCCTGCATGGTTGTCTCTCATCACCTTGTTTCTGTTGGTGGGGTGTAAAGCTAATCAAGAAGATCTGGC
CGGTTATGTCGCACAAGTAGAACGTGAGGCTCGCAAGGAAGTCACTAAACTCAAACCAATTTTGGCATTTGAAGTGACGG
CCTATCAACAGCACTCAGGACGTGAGCCATTTGTGTTGCCTAAAGAGGCTTTGGTGCAAAACCAACCTGTTGCGAAATCA
GACTGTTGGCAGCCTTCCCCACGAGCTAAAAATGGCCCATTAGAGCGTTATCCATTAAGTCAATTGCGCCTGAAAGGGGT
AATGAGCAGTGGCGGATCCATCTCGGCGTTAGTACAAACCCCCGCGGGTAATGTCGTCAAAGTTAAAGCAGGGCAGTACG
TGGGTAACAATAACGGGAAAATTACACGAGTAGATGATAACTATTTATTAATTAACGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

87.209

100

0.872
  pilP Vibrio campbellii strain DS40M4

55.621

98.256

0.547

Multiple sequence alignment