Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY13_RS09425 Genome accession   NZ_CP046823
Coordinates   2067838..2070081 (-) Length   747 a.a.
NCBI ID   WP_000173788.1    Uniprot ID   -
Organism   Vibrio mimicus strain 06-2455     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2062838..2075081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY13_RS09400 - 2062838..2064070 (+) 1233 WP_000926824.1 ABC transporter substrate-binding protein -
  GPY13_RS09405 kdsB 2064134..2064889 (-) 756 WP_000011338.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPY13_RS09410 - 2064889..2065068 (-) 180 WP_000350065.1 Trm112 family protein -
  GPY13_RS09415 lpxK 2065049..2066056 (-) 1008 WP_032470683.1 tetraacyldisaccharide 4'-kinase -
  GPY13_RS09420 msbA 2066059..2067807 (-) 1749 WP_000052158.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY13_RS09425 comEC 2067838..2070081 (-) 2244 WP_000173788.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY13_RS09430 - 2070090..2070619 (+) 530 Protein_1803 DUF2062 domain-containing protein -
  GPY13_RS09435 lolE 2070792..2072036 (-) 1245 WP_000493006.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY13_RS09440 lolD 2072037..2072723 (-) 687 WP_001061285.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY13_RS09445 lolC 2072716..2073924 (-) 1209 WP_005519537.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPY13_RS09450 - 2074100..2074675 (+) 576 WP_000999599.1 hypothetical protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84385.47 Da        Isoelectric Point: 8.8428

>NTDB_id=408456 GPY13_RS09425 WP_000173788.1 2067838..2070081(-) (comEC) [Vibrio mimicus strain 06-2455]
MTLLSNYWSLISFSITVLSAPYWPWMPTWGWAWFCLIFAGLFGYHRTSRKFLGFALAILTIVLHGNLMRDQSNTLYQAGP
DIIIKGKVDSFFAKTRYAYEGLVLIHEVNGQTLNSLMRPRIRLVAPVPLQPNDQFEFSVTLKPVVGRLNETGFDLEAHYM
AHSLVARASVKPNTAYQIVQQSGLRSSLLFQLDALTHTSPFQGLIRALTFGERSGIDEQEWQALRNSGLIHLVAISGLHI
GIAFSLGYLLGAGVMRLHAKLLWSPFVFGALLAVLYAWLAGFTIPTQRALIMCLLNVTLVILGFPLSALKRILLTLCAVL
LWSPFASLSNSFWMSFLAVAIVLYQLASQGKRKAWWKALLLAQISLVCLMAPVTAYFFGGLSITAVLYNLVFIPWFSVVI
VPALFLGLALTVTIPTWAELYWPWVDWTFLPLDWALKFADVGWVVIPQSIQGLIAALVVLSLLYRVMSLRACALSLSIVG
LWWWFPSITPFWRMDVLDVGHGLAIVIEKNGHAIVYDTGSSWPGGSYAQNVIEPILQQRGIRRLDGLILSHLDNDHAGDW
QNLAKRWQPSWIRTSQVGVEFVPCIRGESWQWQSLHFDVLWPPQLVSRAYNQHSCVIRMTDAQSNHSVLLSGDVTEMGEW
LLARDGVPLQSDVMIVPHHGSKTSSTAEFIAKVEPQLAIASLAKDNRWNLPNQQVVERYQNQQVQWLDTGQKGQISLFFY
QEQMDWFAQRGFGWEPWYRHMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=408456 GPY13_RS09425 WP_000173788.1 2067838..2070081(-) (comEC) [Vibrio mimicus strain 06-2455]
ATGACTCTCTTGTCGAATTACTGGTCGCTAATTTCGTTTTCGATCACCGTGCTTTCTGCTCCTTATTGGCCGTGGATGCC
AACATGGGGCTGGGCTTGGTTTTGCCTTATTTTTGCGGGTTTGTTCGGTTATCACCGTACAAGCCGAAAATTCCTTGGCT
TCGCGTTGGCCATACTAACTATCGTGCTACATGGCAACCTTATGCGAGATCAATCCAACACGCTCTATCAAGCAGGCCCG
GATATTATCATAAAAGGTAAGGTTGACAGCTTTTTTGCGAAAACTCGTTACGCTTATGAGGGTTTAGTCTTAATTCATGA
GGTGAATGGTCAAACCTTAAACAGCCTCATGAGGCCTCGTATTCGTCTAGTTGCACCTGTTCCGTTGCAGCCCAATGATC
AATTCGAATTCTCTGTAACGCTTAAGCCTGTTGTTGGGCGGCTCAATGAAACGGGCTTTGATTTGGAAGCCCATTACATG
GCCCATTCTTTGGTCGCGCGAGCCAGTGTTAAACCCAACACTGCTTATCAAATTGTGCAACAGAGTGGCTTAAGGTCAAG
TTTGTTATTTCAACTCGATGCTTTGACTCACACCAGCCCGTTTCAAGGGCTCATCCGAGCGCTAACATTTGGGGAGAGAA
GTGGTATTGATGAGCAAGAGTGGCAGGCACTGCGTAACAGCGGCTTAATCCACTTAGTTGCGATCTCTGGTCTGCATATT
GGTATCGCGTTCAGTTTAGGCTATTTACTGGGAGCAGGCGTGATGCGCTTGCATGCCAAGCTGCTTTGGTCCCCTTTTGT
GTTTGGAGCTTTGCTTGCGGTGTTGTATGCATGGCTAGCAGGTTTCACCATACCGACTCAACGTGCGCTAATCATGTGCT
TACTCAATGTGACATTGGTGATCTTGGGTTTTCCTCTTTCGGCTTTAAAGCGGATTTTGCTTACCTTATGCGCCGTTTTA
CTTTGGTCGCCATTCGCGTCACTCTCAAATAGTTTTTGGATGTCGTTTTTAGCTGTCGCGATTGTGCTGTATCAATTAGC
CAGTCAGGGTAAACGCAAAGCGTGGTGGAAAGCTCTGTTGCTAGCACAAATCTCCCTTGTCTGTTTAATGGCACCTGTTA
CAGCATACTTTTTCGGCGGGTTAAGTATTACGGCGGTTTTGTACAATTTGGTTTTTATACCGTGGTTCTCCGTGGTGATC
GTTCCCGCTTTGTTTTTGGGCTTGGCACTCACAGTAACAATCCCCACTTGGGCTGAGCTTTATTGGCCTTGGGTGGATTG
GACTTTTCTGCCACTTGATTGGGCGCTGAAATTTGCGGATGTGGGTTGGGTAGTGATTCCACAAAGTATACAAGGCCTAA
TTGCTGCGTTAGTGGTGCTCAGTTTGCTGTATCGAGTGATGAGCCTACGAGCCTGTGCCTTATCGTTAAGCATCGTTGGC
TTATGGTGGTGGTTTCCTTCCATTACACCGTTTTGGCGTATGGATGTGTTGGATGTGGGGCATGGCTTAGCGATAGTGAT
TGAGAAAAATGGTCACGCTATTGTTTACGATACGGGCAGCAGTTGGCCGGGAGGAAGTTACGCACAAAACGTCATTGAAC
CGATTTTGCAGCAGCGTGGAATTCGTCGATTAGATGGCTTGATTTTGAGCCATCTCGATAACGATCATGCGGGCGATTGG
CAAAATCTAGCCAAACGTTGGCAACCAAGTTGGATACGCACAAGCCAAGTTGGTGTGGAGTTTGTTCCTTGTATACGTGG
TGAAAGTTGGCAATGGCAATCTCTACATTTCGATGTGTTATGGCCGCCGCAACTGGTCAGCCGAGCTTACAATCAGCATT
CGTGTGTGATCCGTATGACCGATGCTCAGTCTAACCATTCAGTGCTGCTTTCGGGTGATGTCACCGAAATGGGAGAGTGG
TTGCTCGCACGCGATGGAGTGCCACTGCAAAGTGATGTGATGATAGTGCCGCATCACGGCAGTAAAACTTCATCAACCGC
TGAGTTCATTGCTAAAGTTGAGCCACAGTTAGCGATTGCTTCGTTGGCCAAAGATAACCGCTGGAATTTGCCTAACCAGC
AAGTGGTGGAACGTTATCAAAACCAGCAAGTTCAGTGGCTAGATACGGGGCAAAAAGGGCAGATTAGCCTGTTTTTCTAT
CAAGAACAGATGGATTGGTTTGCCCAGCGCGGGTTTGGCTGGGAGCCTTGGTATAGGCATATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-676)

Domain of unknown function (DUF4131) (DUF4131)

(24-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

81.928

100

0.819
  comEC Vibrio campbellii strain DS40M4

41.645

100

0.42
  comEC Vibrio parahaemolyticus RIMD 2210633

40.77

100

0.411

Multiple sequence alignment