Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPX85_RS12980 Genome accession   NZ_CP046822
Coordinates   2039679..2041922 (-) Length   747 a.a.
NCBI ID   WP_158138629.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 07-2421     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2034679..2046922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX85_RS12960 kdsB 2035981..2036727 (-) 747 WP_158138627.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPX85_RS12965 - 2036727..2036906 (-) 180 WP_154167670.1 Trm112 family protein -
  GPX85_RS12970 lpxK 2036887..2037894 (-) 1008 WP_158138628.1 tetraacyldisaccharide 4'-kinase -
  GPX85_RS12975 msbA 2037898..2039646 (-) 1749 WP_154167664.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPX85_RS12980 comEC 2039679..2041922 (-) 2244 WP_158138629.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPX85_RS12985 - 2041931..2042452 (+) 522 WP_110166641.1 DUF2062 domain-containing protein -
  GPX85_RS12990 lolE 2042600..2043844 (-) 1245 WP_158138630.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPX85_RS12995 lolD 2043844..2044530 (-) 687 WP_154167560.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPX85_RS13000 lolC 2044523..2045731 (-) 1209 WP_161425121.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPX85_RS13005 - 2045950..2046519 (+) 570 WP_040904201.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83858.02 Da        Isoelectric Point: 9.6079

>NTDB_id=408420 GPX85_RS12980 WP_158138629.1 2039679..2041922(-) (comEC) [Vibrio metschnikovii strain 07-2421]
MALLSNYWTLASFSLTILSAPFWPWMPKWPIIIGVIVVLMMSLVTRRGRGCIGIALALVLIITHGNKVTAQSNNILQFAT
DITIKGVADSFFTANRYGFSGSFVVRSINGQSLPRFLSPTVRLNSPIALQLGDHAQFVVQAKPIYGRLNEVGFDQEAFFL
SQGWSAQATVRPNTAYQIIPSSSLRAIFFQQIEQRTRSSKVQGFILALTFGERSGITEQQWLELRNSGLIHLTAISGLHI
GMAFGFGYLLGGMCSRLLRKGLWLPFVCGGLFALGYAWLAGFTLPTQRALMMCWLNILLVMFNVRVTAIQRVLLTLAAVL
ALDPFASLSTSFWLSFLAVSFVIYQVSVIDSRWPLWKKVFAGHLLLVMLMAPVTAYFFSGVSLYSALYNLVFIPWFSFVV
VPLLFIVLCGNVLIADQVQWLWTWVEAALMPFSWSLGFAEHSWLPVNQTWQYSLLALFLVMMLRPLLTARSLIAIGLLFS
ATWLTIQPKVYWQVDMLDVGHGLAMVIERNGRYVLYDTGSSWHEGSVATSLIIPLLTRRGGLDALDGVIISHSDNDHAGG
LADIQSRLKPAWIRASYRNEHFSPCIQGEFWQWQELTFEVVWPPRLVDRADNPHSCVVRMVDKQYGHSVLLTGDVTAIGE
WLLSRDALLDSDVLVVPHHGSQTSSTQAFIEKVNPQLAIASLAKGHRWRLPHPDVLARYQSLGIPWLDTGEVGQITLRYQ
GSQRQLFTLRGGRITPWYRQMLRKEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=408420 GPX85_RS12980 WP_158138629.1 2039679..2041922(-) (comEC) [Vibrio metschnikovii strain 07-2421]
ATGGCTCTCTTATCGAATTACTGGACGTTGGCTTCGTTCTCGTTAACGATACTCTCTGCCCCATTTTGGCCTTGGATGCC
CAAATGGCCTATTATCATTGGCGTTATTGTTGTGTTGATGATGAGTCTCGTGACACGCCGAGGCAGGGGATGCATCGGAA
TTGCACTGGCCTTAGTGTTGATAATAACACACGGAAATAAAGTAACCGCACAGTCCAATAATATCTTACAATTTGCGACA
GATATTACCATAAAAGGTGTCGCTGACAGCTTTTTTACTGCAAATCGTTACGGTTTTAGTGGCTCTTTTGTGGTGAGATC
AATTAATGGTCAATCTTTACCCCGATTTTTGTCTCCCACGGTACGTTTAAATTCCCCGATCGCCTTACAATTGGGTGATC
ATGCTCAATTTGTGGTACAGGCGAAGCCGATTTATGGGCGATTGAATGAAGTCGGGTTTGATCAAGAAGCCTTTTTTCTG
AGTCAAGGCTGGAGCGCACAAGCGACCGTTCGTCCCAATACAGCTTATCAAATCATCCCCAGTTCAAGTTTGCGGGCGAT
ATTTTTTCAACAGATTGAGCAACGAACGCGATCCAGCAAGGTTCAAGGCTTTATTTTAGCCCTCACTTTTGGTGAGCGTA
GCGGGATTACCGAACAGCAGTGGTTGGAATTACGCAATAGCGGTTTAATCCATCTCACGGCGATCTCAGGGTTGCACATT
GGTATGGCATTTGGTTTTGGCTATTTGTTAGGGGGTATGTGTAGCCGCCTTTTGAGAAAAGGCTTATGGCTACCTTTTGT
TTGCGGTGGATTGTTTGCACTTGGTTATGCTTGGCTGGCAGGTTTTACGCTACCGACTCAGCGAGCATTGATGATGTGTT
GGTTAAATATTCTATTAGTCATGTTTAATGTTCGAGTGACCGCTATTCAACGGGTATTATTAACGTTAGCTGCGGTATTG
GCTTTGGACCCTTTTGCTTCATTAAGCACAAGTTTCTGGTTATCTTTTTTAGCGGTCAGTTTTGTTATTTACCAAGTCTC
CGTCATCGATAGCCGATGGCCGCTATGGAAGAAAGTGTTTGCTGGTCATCTATTATTAGTGATGTTAATGGCTCCGGTGA
CGGCTTACTTCTTCTCTGGCGTTAGCCTTTATTCCGCGCTTTATAATCTCGTGTTTATTCCTTGGTTCAGCTTTGTGGTT
GTTCCCTTACTGTTTATTGTCTTGTGTGGCAATGTGTTGATCGCCGATCAAGTCCAGTGGCTTTGGACTTGGGTTGAGGC
GGCTTTAATGCCGTTTAGCTGGTCGTTAGGCTTTGCAGAACATAGCTGGTTACCGGTTAACCAAACGTGGCAATATAGTT
TGTTGGCTTTATTTTTAGTGATGATGTTACGGCCACTTTTGACCGCGCGATCTCTTATTGCGATTGGGTTACTTTTTAGC
GCGACTTGGTTAACAATACAACCGAAGGTCTACTGGCAAGTGGATATGTTGGATGTTGGACATGGCTTGGCGATGGTTAT
TGAGCGTAACGGACGTTATGTTTTATACGATACAGGGAGTAGTTGGCATGAAGGCAGCGTGGCGACATCACTGATTATTC
CATTATTAACTCGACGCGGAGGACTAGATGCCCTTGATGGCGTGATCATTAGCCATAGTGATAATGATCACGCGGGAGGA
TTAGCCGATATTCAATCACGGCTAAAACCAGCTTGGATTCGCGCTAGTTACCGTAATGAACATTTCTCTCCGTGTATTCA
AGGTGAATTCTGGCAATGGCAAGAATTGACTTTTGAAGTCGTGTGGCCACCTCGTTTGGTTGATAGAGCGGATAACCCTC
ATTCTTGTGTGGTGCGTATGGTTGATAAGCAATATGGGCATAGTGTGTTGTTGACCGGTGATGTGACGGCGATTGGTGAG
TGGTTACTCAGTCGTGACGCGTTATTAGACAGTGATGTGTTAGTGGTTCCTCATCATGGAAGTCAAACGTCTTCTACACA
AGCGTTTATAGAAAAGGTCAATCCACAGTTGGCGATTGCTTCATTGGCGAAAGGTCATCGATGGCGATTACCTCACCCAG
ACGTTCTCGCGCGTTATCAATCTTTAGGCATTCCGTGGCTTGATACGGGAGAGGTCGGACAAATAACACTCCGTTACCAA
GGATCTCAACGTCAGCTTTTCACCTTACGCGGTGGGCGAATCACGCCTTGGTATAGGCAGATGCTACGTAAAGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(25-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-678)

Competence protein (Competence)

(208-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

52.005

100

0.521
  comEC Vibrio parahaemolyticus RIMD 2210633

41.06

100

0.415
  comEC Vibrio campbellii strain DS40M4

41.169

100

0.415

Multiple sequence alignment