Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPY06_RS11245 Genome accession   NZ_CP046820
Coordinates   1201103..1201621 (-) Length   172 a.a.
NCBI ID   WP_000794742.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1196103..1206621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS11230 aroB 1197538..1198623 (-) 1086 WP_167517860.1 3-dehydroquinate synthase -
  GPY06_RS11235 aroK 1198651..1199175 (-) 525 WP_000818614.1 shikimate kinase AroK -
  GPY06_RS11240 pilQ 1199362..1201077 (-) 1716 WP_167517861.1 type IV pilus secretin PilQ Machinery gene
  GPY06_RS11245 pilP 1201103..1201621 (-) 519 WP_000794742.1 pilus assembly protein PilP Machinery gene
  GPY06_RS11250 pilO 1201611..1202201 (-) 591 WP_000135851.1 type 4a pilus biogenesis protein PilO Machinery gene
  GPY06_RS11255 pilN 1202194..1202772 (-) 579 WP_167517862.1 PilN domain-containing protein Machinery gene
  GPY06_RS11260 pilM 1202762..1203778 (-) 1017 WP_158120071.1 type IV pilus assembly protein PilM Machinery gene
  GPY06_RS11265 - 1203920..1206397 (+) 2478 WP_167517863.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19265.44 Da        Isoelectric Point: 10.3195

>NTDB_id=408359 GPY06_RS11245 WP_000794742.1 1201103..1201621(-) (pilP) [Vibrio metoecus strain 2011V-1015]
MKNNRFWLPLMVMSLLVGCKANQDDLVGFVAQVERDARKDVSKLKPILEFQVTTYQERKAREPFVLPREALVQSQPVVKA
DCWQPMPRAKNGPLERYPLSQLRLKGVMSSGGSISALVQTPTGNVVKVKAGQYLGNNNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=408359 GPY06_RS11245 WP_000794742.1 1201103..1201621(-) (pilP) [Vibrio metoecus strain 2011V-1015]
ATGAAAAATAACCGGTTCTGGCTGCCACTGATGGTGATGTCGCTGTTGGTGGGATGCAAAGCGAACCAAGACGATTTGGT
GGGGTTTGTCGCTCAGGTTGAGCGGGATGCGCGTAAGGATGTCAGCAAACTCAAGCCGATTTTGGAATTTCAAGTGACGA
CTTACCAAGAGCGTAAAGCGCGTGAGCCGTTTGTGTTGCCCAGAGAAGCCTTGGTGCAAAGTCAACCTGTTGTTAAAGCC
GACTGTTGGCAGCCCATGCCTCGGGCGAAAAATGGTCCTCTGGAACGTTACCCACTCAGTCAATTGCGCTTAAAAGGTGT
GATGAGTAGCGGAGGCTCCATCTCTGCGTTGGTTCAAACACCAACCGGTAATGTGGTGAAAGTAAAAGCAGGACAATATC
TAGGTAACAATAACGGAAAAGTAACCCGTGTTGATGATAACTATTTGTTAATTAATGAAACCTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

81.977

100

0.82
  pilP Vibrio campbellii strain DS40M4

57.558

100

0.576

Multiple sequence alignment