Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   H0A38_RS09070 Genome accession   NZ_CP059048
Coordinates   1873502..1874173 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis strain LAC460     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1868502..1879173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS09045 (H0A38_08990) pheA 1868807..1869646 (-) 840 WP_058203948.1 prephenate dehydratase -
  H0A38_RS09050 (H0A38_08995) - 1869648..1870136 (-) 489 WP_129881040.1 shikimate kinase -
  H0A38_RS09055 (H0A38_09000) aroA 1870160..1871452 (-) 1293 WP_129881041.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  H0A38_RS09060 (H0A38_09005) - 1871573..1872637 (-) 1065 WP_129881042.1 prephenate dehydrogenase -
  H0A38_RS09065 (H0A38_09010) - 1872640..1873515 (-) 876 WP_012898325.1 HAMP domain-containing sensor histidine kinase -
  H0A38_RS09070 (H0A38_09015) braR 1873502..1874173 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  H0A38_RS09075 (H0A38_09020) - 1874176..1875240 (-) 1065 WP_129881043.1 VanZ family protein -
  H0A38_RS09080 (H0A38_09025) - 1875421..1877421 (-) 2001 WP_029344276.1 FtsX-like permease family protein -
  H0A38_RS09085 (H0A38_09030) - 1877414..1878193 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  H0A38_RS09090 (H0A38_09035) - 1878208..1878351 (-) 144 WP_014570691.1 hypothetical protein -
  H0A38_RS09095 (H0A38_09040) - 1878382..1878741 (-) 360 WP_129881044.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=408362 H0A38_RS09070 WP_003132782.1 1873502..1874173(-) (braR) [Lactococcus lactis strain LAC460]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=408362 H0A38_RS09070 WP_003132782.1 1873502..1874173(-) (braR) [Lactococcus lactis strain LAC460]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAGTTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGATATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413

Multiple sequence alignment