Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY06_RS07510 Genome accession   NZ_CP046820
Coordinates   408007..410250 (-) Length   747 a.a.
NCBI ID   WP_167517829.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1015     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403007..415250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY06_RS07490 kdsB 404300..405058 (-) 759 WP_055027984.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPY06_RS07495 - 405058..405237 (-) 180 WP_158119750.1 Trm112 family protein -
  GPY06_RS07500 lpxK 405218..406225 (-) 1008 WP_055065150.1 tetraacyldisaccharide 4'-kinase -
  GPY06_RS07505 msbA 406228..407976 (-) 1749 WP_000052162.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY06_RS07510 comEC 408007..410250 (-) 2244 WP_167517829.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY06_RS07515 - 410259..410789 (+) 531 WP_009355280.1 DUF2062 domain-containing protein -
  GPY06_RS07520 lolE 410944..412188 (-) 1245 WP_158119754.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY06_RS07525 lolD 412189..412875 (-) 687 WP_001061281.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY06_RS07530 lolC 412868..414076 (-) 1209 WP_167517830.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPY06_RS07535 - 414252..414827 (+) 576 WP_000999600.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84916.36 Da        Isoelectric Point: 9.0582

>NTDB_id=408349 GPY06_RS07510 WP_167517829.1 408007..410250(-) (comEC) [Vibrio metoecus strain 2011V-1015]
MTLLSNYWSLISFSITLLSAPYWPWMPTWGWAWFCLILIGVLSYYRACRKLLGFALAIFTVVCHGNLMRDQSNMLSQAGS
DSIIKGQVDSFFTQTRYAYEGLVLIHEVNGQTLNRLMWPRVRLTAPVALKPNEQFEFRVVFKPMVGRLNETGFDLEAHSL
TQSVLARAVVSPNTTYQIVPQHSLRSALLTQLELLTQNSPYQGLILALTFGERKGIGEQEWQALRNSGLIHLVAISGLHI
GIAFSIGYLLGKGLMRLHGKLLWSPFVVGALLAVLYAWLAGFTIPTQRALIMCLLNVGLVILGFPLSALKRILLTLCAVL
VWSPFASLSNSFWMSFLAVAIVLYQLANQEKRQAWWKALLWAQLTLVCLMAPVTAYFFGGLSMTSVVYNLLFIPWFSVVI
VPALFVGLFLSVTMSYWATLYWPWVDWTFYPLDWALQFADVGWVVIPKTVQGFVAALVVISLLYRVMSLRACILAWCLAV
LWWWFPSVTPRWRMDVLDVGHGLAIVIEQDKRAIIYDTGSSWSGGSYVESLIEPILQQRGIRRLDGLILSHLDNDHAGDW
QSLAKRWQPEWIRASQVDVAFMPCMRGERWQWQSLDFQVLWPPRLVNRAYNQHSCVIRMTDLQSNHSVLLSGDVTAMGEW
LLARGGALLSSEVMIVPHHGSKTSSTAEFIAKVEPRMAIASLAKDNRWNLPNPQVVERYQSQQSDWLDTGRAGQISLFFY
PDQFDWFTQRGVGWVPWYRQMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=408349 GPY06_RS07510 WP_167517829.1 408007..410250(-) (comEC) [Vibrio metoecus strain 2011V-1015]
ATGACTCTCTTGTCGAATTACTGGTCGCTTATCTCTTTTTCGATCACCTTGCTTTCTGCACCGTATTGGCCTTGGATGCC
GACATGGGGCTGGGCTTGGTTTTGCCTTATCCTGATTGGCGTGCTCAGTTATTACCGAGCTTGCCGCAAACTCCTTGGCT
TCGCGTTGGCCATATTCACTGTCGTGTGCCATGGCAACCTAATGCGAGATCAATCCAACATGCTCTCTCAAGCAGGCTCG
GATAGTATCATAAAAGGTCAGGTTGACAGCTTTTTTACGCAAACTCGTTACGCATATGAGGGTTTAGTCTTAATTCATGA
GGTGAATGGTCAAACCTTAAACAGACTGATGTGGCCTCGTGTACGCTTAACGGCTCCAGTAGCGCTAAAACCGAATGAGC
AGTTCGAATTTAGGGTTGTATTTAAGCCGATGGTGGGGCGTCTTAATGAAACGGGCTTTGATTTAGAAGCCCACTCTCTG
ACTCAATCGGTTCTTGCGCGAGCGGTTGTCAGCCCGAATACGACATACCAGATTGTGCCGCAACATAGCCTACGCTCCGC
TTTACTGACGCAGCTTGAGTTACTCACCCAAAACAGCCCTTATCAAGGGTTGATATTAGCGCTGACGTTTGGTGAAAGAA
AAGGGATTGGTGAACAAGAATGGCAAGCCTTGCGCAACAGCGGCTTAATTCACTTGGTGGCGATTTCTGGCTTGCATATT
GGTATCGCTTTCAGTATTGGGTACTTGTTAGGCAAGGGGCTGATGCGTCTGCATGGCAAATTGTTGTGGTCTCCTTTCGT
GGTGGGTGCATTATTAGCCGTGTTATACGCATGGCTCGCGGGGTTCACTATACCAACCCAGCGTGCGCTGATTATGTGCT
TGCTGAATGTGGGATTGGTGATCTTGGGGTTTCCTCTTTCAGCATTAAAACGGATCCTGCTGACGTTGTGTGCGGTTTTA
GTTTGGTCGCCCTTTGCATCGCTTTCAAACAGTTTTTGGATGTCATTTCTCGCCGTTGCGATTGTGTTGTATCAATTGGC
CAATCAAGAGAAGCGTCAGGCTTGGTGGAAAGCGTTATTGTGGGCGCAACTGACTCTTGTCTGCTTAATGGCGCCAGTCA
CCGCATACTTTTTCGGTGGATTAAGCATGACGTCCGTGGTGTACAATTTACTGTTTATCCCTTGGTTCTCCGTGGTGATT
GTTCCCGCTTTGTTTGTGGGTTTGTTTCTCAGCGTGACGATGTCGTATTGGGCGACGCTTTATTGGCCTTGGGTGGACTG
GACGTTCTATCCCCTCGATTGGGCGCTGCAGTTTGCGGATGTAGGATGGGTGGTGATACCGAAAACCGTACAAGGTTTCG
TGGCTGCCTTAGTCGTGATCAGTTTGTTGTACCGAGTGATGAGCTTACGAGCTTGCATTTTGGCATGGTGTCTTGCGGTG
CTGTGGTGGTGGTTTCCTTCTGTCACGCCTCGGTGGCGCATGGATGTTTTGGATGTCGGGCACGGTTTAGCCATCGTGAT
TGAGCAAGATAAGCGCGCCATTATCTATGATACGGGGAGCAGTTGGTCGGGAGGCAGTTACGTAGAAAGTCTGATCGAGC
CCATTTTGCAACAGCGTGGTATTCGCCGGCTCGATGGGTTGATTCTAAGTCACCTCGATAATGACCATGCCGGAGATTGG
CAAAGTTTGGCCAAGCGTTGGCAACCGGAATGGATACGTGCAAGCCAAGTTGATGTGGCGTTTATGCCCTGTATGCGCGG
TGAGCGCTGGCAATGGCAGTCATTAGATTTCCAAGTACTATGGCCTCCGAGGCTGGTGAATCGAGCCTACAATCAGCATT
CGTGTGTGATTCGCATGACCGATCTCCAATCTAACCATTCCGTGTTGTTATCTGGGGATGTCACCGCCATGGGAGAATGG
CTACTTGCTCGTGGAGGTGCGCTTTTATCGAGCGAAGTGATGATAGTGCCTCATCACGGCAGCAAAACCTCATCCACCGC
TGAGTTTATTGCGAAAGTCGAACCACGGATGGCGATTGCTTCCCTCGCCAAAGATAACCGCTGGAATTTGCCTAATCCAC
AAGTGGTGGAGCGTTATCAAAGCCAGCAATCTGATTGGCTAGATACTGGTCGCGCGGGACAAATCAGTCTGTTTTTCTAT
CCAGATCAGTTTGATTGGTTTACTCAGCGTGGAGTTGGCTGGGTGCCATGGTATAGGCAGATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

78.313

100

0.783
  comEC Vibrio parahaemolyticus RIMD 2210633

41.169

100

0.415
  comEC Vibrio campbellii strain DS40M4

40.027

100

0.403

Multiple sequence alignment