Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPX95_RS12505 Genome accession   NZ_CP046817
Coordinates   2693095..2695338 (+) Length   747 a.a.
NCBI ID   WP_199250719.1    Uniprot ID   -
Organism   Vibrio metoecus strain 06-2478     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2688095..2700338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS12480 - 2688519..2689093 (-) 575 Protein_2360 PilZ domain-containing protein -
  GPX95_RS12485 lolC 2689269..2690477 (+) 1209 WP_000468905.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPX95_RS12490 lolD 2690470..2691156 (+) 687 WP_055030331.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPX95_RS12495 lolE 2691157..2692401 (+) 1245 WP_055030655.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPX95_RS12500 - 2692556..2693086 (-) 531 WP_009355280.1 DUF2062 domain-containing protein -
  GPX95_RS12505 comEC 2693095..2695338 (+) 2244 WP_199250719.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPX95_RS12510 msbA 2695369..2697117 (+) 1749 WP_000052162.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPX95_RS12515 lpxK 2697120..2698127 (+) 1008 WP_055030732.1 tetraacyldisaccharide 4'-kinase -
  GPX95_RS12520 - 2698108..2698287 (+) 180 WP_000350067.1 Trm112 family protein -
  GPX95_RS12525 kdsB 2698287..2699045 (+) 759 WP_055030654.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 84868.26 Da        Isoelectric Point: 8.8229

>NTDB_id=408331 GPX95_RS12505 WP_199250719.1 2693095..2695338(+) (comEC) [Vibrio metoecus strain 06-2478]
MTLLSNYWSLISFSITLLSAPYWPWMPTWGWAWFCLILIGVLSYYRACRKLLGFALAIFTVVCHGNLMRDQSNMLSQAGS
DSIIKGQVDSFFTQTRYAYEGLVLIHEVNGQTLNRLMWPRVRLTAPVALKPNEQFEFTVVFKPIVGRLNETGFDLEAHSL
TQSVLARAVVSPNTTYQIVPQHSLRSALLTQLELLTQNSPYQGLILALTFGERKGIGEQEWQALRNSGLIHLVAISGLHI
GIAFSIGYLLGKGLMRLHGKLLWSPFVVGALLAVLYAWLAGFTIPTQRALIMCLLNVGLVILGFPLSALKRILLTLCAVL
VWSPFASLSNSFWMSFLAVAIVLYQLANQEKRQAWWKALLWAQLTLVCLMAPVTAYFFGGLSMTSVVYNLLFIPWFSVVI
VPALFVGLFLSVTMSYWATLYWPWVDWTFYPLDWALQFADVGWVVIPKTVQGFVAALVVISLLYRVMSLRACILAWCLAV
LWWWFPSVTPRWRMDVLDVGHGLAIVIEQDKRAIIYDTGSSWSGGSYVETLIEPILQQRGIRRLDGLILSHLDNDHAGDW
QSLAKRWQPEWIRASQVDVAFMPCMRGERWQWQSLDFQVLWPPRLVNRAYNQHSCVIRMTDLQSNHSVLLSGDVTAMGEW
LLARGGTLLSSEVMIVPHHGSKTSSTAEFIAKVEPRMAIASLAKDNRWNLPNPQVVERYQSQQSDWLDTGHAGQISLFFY
PDQFDWFTQRGVGWVPWYRQMLRKGVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=408331 GPX95_RS12505 WP_199250719.1 2693095..2695338(+) (comEC) [Vibrio metoecus strain 06-2478]
ATGACTCTCTTGTCGAATTACTGGTCGCTTATCTCTTTTTCGATCACCTTGCTTTCTGCACCGTATTGGCCTTGGATGCC
GACATGGGGCTGGGCTTGGTTTTGCCTTATCCTGATTGGCGTGCTCAGTTATTACCGAGCTTGCCGCAAACTCCTTGGCT
TCGCGTTGGCCATATTCACTGTCGTGTGCCATGGCAACCTAATGCGAGATCAATCCAACATGCTCTCTCAAGCAGGCTCG
GATAGTATCATAAAAGGTCAGGTTGACAGCTTTTTTACGCAAACTCGTTACGCATATGAGGGTTTAGTCTTAATTCATGA
GGTGAATGGTCAAACCTTAAACAGACTGATGTGGCCTCGTGTACGCTTAACGGCTCCAGTAGCGCTAAAACCGAATGAGC
AGTTCGAATTTACGGTTGTATTTAAGCCCATTGTGGGGCGTCTTAATGAAACTGGCTTTGATTTAGAAGCCCACTCTCTG
ACTCAATCGGTTCTTGCGCGAGCGGTTGTCAGCCCGAATACGACATACCAGATTGTGCCGCAACATAGCCTACGCTCCGC
TTTACTGACGCAGCTTGAGTTACTCACCCAAAACAGCCCTTATCAAGGGTTGATATTAGCGCTGACGTTTGGTGAAAGAA
AAGGGATTGGTGAACAAGAATGGCAAGCCTTGCGCAACAGCGGCTTAATTCACTTGGTGGCGATTTCTGGCTTGCATATT
GGTATCGCTTTCAGTATTGGGTACTTGTTAGGCAAGGGGCTGATGCGTCTGCATGGCAAATTGTTGTGGTCTCCTTTCGT
TGTGGGTGCATTATTAGCCGTGTTATACGCATGGCTCGCGGGGTTCACTATACCAACCCAGCGTGCGCTGATTATGTGCT
TGCTGAATGTGGGATTGGTGATCTTGGGGTTTCCTCTTTCAGCATTAAAACGGATCCTGCTGACGTTGTGTGCGGTTTTA
GTTTGGTCGCCCTTTGCATCGCTTTCAAACAGTTTTTGGATGTCATTTCTCGCCGTTGCGATTGTGTTGTATCAATTGGC
CAATCAAGAGAAGCGTCAGGCTTGGTGGAAAGCGTTATTGTGGGCGCAACTGACTCTTGTCTGCTTAATGGCGCCAGTCA
CCGCATACTTTTTCGGTGGATTAAGCATGACGTCCGTGGTGTACAATTTACTGTTTATCCCTTGGTTCTCCGTGGTGATT
GTTCCCGCTTTGTTTGTGGGTTTGTTTCTCAGCGTGACGATGTCGTATTGGGCGACGCTTTATTGGCCTTGGGTGGACTG
GACGTTCTATCCCCTCGATTGGGCGCTGCAGTTTGCGGATGTAGGATGGGTGGTGATACCGAAAACCGTACAAGGTTTCG
TGGCTGCCTTGGTCGTGATCAGTTTGTTGTACCGAGTGATGAGCTTACGAGCTTGCATTTTGGCATGGTGTCTTGCGGTG
CTGTGGTGGTGGTTTCCTTCTGTCACCCCTCGGTGGCGCATGGATGTTTTGGATGTCGGACACGGCTTAGCCATCGTGAT
TGAGCAAGATAAGCGCGCCATTATCTACGATACGGGGAGCAGTTGGTCGGGAGGCAGTTACGTAGAAACTCTGATCGAGC
CCATTTTGCAACAGCGGGGTATTCGCCGGCTCGATGGGTTGATTCTAAGCCACCTCGATAATGATCATGCCGGAGATTGG
CAAAGTTTGGCCAAGCGTTGGCAACCGGAATGGATACGTGCAAGCCAAGTTGATGTGGCGTTTATGCCCTGTATGCGCGG
TGAGCGCTGGCAATGGCAGTCATTAGATTTCCAAGTGCTATGGCCTCCGAGGCTGGTGAATCGAGCCTACAATCAGCATT
CGTGTGTGATTCGCATGACCGATCTCCAATCTAACCATTCCGTGTTGTTATCTGGGGATGTCACCGCCATGGGAGAATGG
CTACTTGCTCGTGGAGGTACGCTTTTATCGAGCGAAGTGATGATAGTGCCTCATCACGGCAGCAAAACCTCATCCACCGC
TGAGTTTATTGCGAAAGTCGAACCACGGATGGCGATTGCTTCCCTCGCCAAAGATAACCGCTGGAATTTGCCTAACCCAC
AAGTGGTGGAGCGTTATCAAAGCCAGCAATCTGATTGGCTAGATACTGGCCACGCGGGACAAATCAGTCTGTTTTTCTAT
CCAGATCAGTTTGATTGGTTTACTCAGCGTGGAGTTGGCTGGGTGCCATGGTATAGGCAGATGCTGCGTAAAGGAGTAGA
ATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-669)

Competence protein (Competence)

(208-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

78.313

100

0.783
  comEC Vibrio parahaemolyticus RIMD 2210633

41.301

100

0.416
  comEC Vibrio campbellii strain DS40M4

40.16

100

0.404

Multiple sequence alignment