Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   H0A38_RS01980 Genome accession   NZ_CP059048
Coordinates   405157..405873 (-) Length   238 a.a.
NCBI ID   WP_021466934.1    Uniprot ID   -
Organism   Lactococcus lactis strain LAC460     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 400157..410873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0A38_RS01965 (H0A38_01965) cdaA 401849..402727 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  H0A38_RS01970 (H0A38_01970) - 402717..403676 (+) 960 WP_012897245.1 YbbR-like domain-containing protein -
  H0A38_RS01975 (H0A38_01975) glmM 403722..405080 (+) 1359 WP_226319365.1 phosphoglucosamine mutase -
  H0A38_RS01980 (H0A38_01980) treR 405157..405873 (-) 717 WP_021466934.1 trehalose operon repressor Regulator
  H0A38_RS01985 (H0A38_01985) - 405984..406469 (+) 486 WP_015425865.1 PTS glucose transporter subunit IIA -
  H0A38_RS01990 (H0A38_01990) - 406606..408171 (+) 1566 WP_025016545.1 PTS transporter subunit EIIC -
  H0A38_RS01995 (H0A38_01995) - 408239..410548 (+) 2310 WP_039114648.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27906.57 Da        Isoelectric Point: 6.4168

>NTDB_id=408324 H0A38_RS01980 WP_021466934.1 405157..405873(-) (treR) [Lactococcus lactis strain LAC460]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDNLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=408324 H0A38_RS01980 WP_021466934.1 405157..405873(-) (treR) [Lactococcus lactis strain LAC460]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
GAGTGAAAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCATGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGCTTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGGGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATAATTTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCTTGCGAAGATGA
CTTTAAATACCTTGACTTAAACCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGTCATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462

Multiple sequence alignment