Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPX95_RS08905 Genome accession   NZ_CP046817
Coordinates   1937652..1938284 (-) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio metoecus strain 06-2478     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932652..1943284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX95_RS08885 - 1932823..1934033 (+) 1211 Protein_1672 aspartate aminotransferase family protein -
  GPX95_RS08890 astA 1934165..1935184 (+) 1020 WP_000962038.1 arginine N-succinyltransferase -
  GPX95_RS08895 astD 1935194..1936650 (+) 1457 Protein_1674 succinylglutamate-semialdehyde dehydrogenase -
  GPX95_RS08900 - 1936798..1937589 (+) 792 WP_055030908.1 DUF1338 domain-containing protein -
  GPX95_RS08905 crp 1937652..1938284 (-) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPX95_RS08910 - 1938527..1939396 (-) 870 WP_001274669.1 phosphoribulokinase -
  GPX95_RS08915 - 1939491..1939700 (-) 210 WP_000586572.1 YheU family protein -
  GPX95_RS08920 - 1939809..1940798 (-) 990 WP_055030909.1 hydrolase -
  GPX95_RS08925 - 1940795..1941280 (-) 486 WP_055030910.1 TIGR02444 family protein -
  GPX95_RS08930 - 1941281..1943197 (-) 1917 WP_158160159.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=408324 GPX95_RS08905 WP_000242749.1 1937652..1938284(-) (crp) [Vibrio metoecus strain 06-2478]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408324 GPX95_RS08905 WP_000242749.1 1937652..1938284(-) (crp) [Vibrio metoecus strain 06-2478]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGTTGATCCACGCCGGTGAAAAAGCGGAAACGCTGTACTACATCGTGAAAGGTTCAGTGGCGGTACTGATTAAAG
ATGAAGAAGGTAAAGAGATGATCCTCTCTTACCTGAACCAAGGTGATTTTATCGGTGAACTTGGCTTGTTTGAAGAAGGC
CAAGAACGTACCGCTTGGGTTCGTGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
CCAAGTAAACCCAGATATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACAGGCCGTATCGCTCAAACTCTGCTGAACCTTGCGCGTCAGCCAGATGCGATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment