Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPX87_RS11040 Genome accession   NZ_CP046815
Coordinates   2375406..2377535 (+) Length   709 a.a.
NCBI ID   WP_238843306.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2370406..2382535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS11020 lolE 2370664..2371902 (+) 1239 WP_078926276.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPX87_RS11025 - 2371979..2373901 (-) 1923 WP_078926277.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GPX87_RS11030 - 2373898..2374518 (-) 621 WP_078926308.1 NAD(P)H-dependent oxidoreductase -
  GPX87_RS11035 - 2374768..2375283 (-) 516 WP_078926278.1 DUF2062 domain-containing protein -
  GPX87_RS11040 comEC 2375406..2377535 (+) 2130 WP_238843306.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPX87_RS11045 msbA 2377568..2379316 (+) 1749 WP_078926280.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPX87_RS11050 lpxK 2379320..2380327 (+) 1008 WP_078926281.1 tetraacyldisaccharide 4'-kinase -
  GPX87_RS11055 - 2380308..2380487 (+) 180 WP_078926282.1 Trm112 family protein -
  GPX87_RS11060 kdsB 2380487..2381236 (+) 750 WP_078926283.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 80047.49 Da        Isoelectric Point: 8.8044

>NTDB_id=408288 GPX87_RS11040 WP_238843306.1 2375406..2377535(+) (comEC) [Vibrio cincinnatiensis strain 1398-82]
MSMMLFMNRCRGCIGVALALVVIITQGNLVRAQSNIILQFEGDITIKGEVNSFFNATSHGFVGSAVIRSINHQPLPFFLT
PKIHLTTPIALQLGDQFEFIAQVKPIYGRLNEVGFDQESFYFSQRWVARANVKKNSTYQIIPNSHLRSKLYSHIKQLTEL
SPVQGMILALTFGERSLITAEQWLGLRNSGLIHLTAISGLHIGMAFGVGYVFGLLLIRILTGRLWLPFVLGGGLALAYAW
LAGFTLPTQRALIMCWLNIVLLLLNVRVTAIQRILLTLSAVALWDPFTALSASFWLSFLAVGLVIYQISTINPQFVWWKK
LLLGQFRLSILMVPMSAYFFAGVSLSSVLYNILFIPWFSFVVIPLLFMALICYLLFQYESSWWWEWLESALWPFNVSLGL
SSPSWIDASLSSQYFLLMILTLWFLRPMLSKSAGIAITMIVAMGWVSFPDKQGWRVDVLDVGHGLAVLIERNGAFVLYDT
GSGWEGGSYAQSLIAPLLIHRGYSHLDGVIISHFDNDHSGGLYDIQRLLSPTWIRASQHKPSIQPCKQGEQWQWQGLTFT
ALWPPQLVSRAENPHSCVVRIEDPEYGHSLLLTGDVTAVGEWLLSREAEILESDVLLVPHHGSQTSSTLAFIKTVNPQIA
LASLAKGHRWRLPHPDVLSRYQDLGINWLDTGDMGQISLLYRKEDRQLQTLRQRGIRPWYRQMLRNEVE

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=408288 GPX87_RS11040 WP_238843306.1 2375406..2377535(+) (comEC) [Vibrio cincinnatiensis strain 1398-82]
ATGAGTATGATGTTATTCATGAACCGTTGCAGGGGATGCATCGGGGTCGCTCTGGCTTTGGTGGTAATAATAACACAAGG
AAACTTGGTGAGAGCACAGTCCAATATAATCTTACAATTTGAGGGCGATATTACCATAAAAGGAGAGGTTAACAGCTTTT
TTAACGCAACTTCACACGGTTTTGTTGGTTCGGCGGTTATTCGTTCAATTAATCATCAGCCTTTACCCTTTTTTCTAACA
CCTAAGATACATTTAACGACGCCTATCGCATTACAGCTGGGGGATCAATTTGAGTTTATTGCGCAAGTGAAACCCATTTA
TGGACGGTTAAATGAAGTTGGGTTTGATCAGGAGTCTTTTTACTTTAGCCAGCGTTGGGTTGCCCGTGCGAATGTTAAAA
AAAATTCAACCTATCAAATTATTCCCAATAGCCATTTACGTTCGAAGCTCTATTCCCATATTAAACAGCTCACAGAGTTG
AGCCCAGTACAAGGTATGATACTTGCCCTGACTTTTGGTGAGCGCAGTTTGATTACCGCTGAGCAGTGGTTAGGGCTGCG
TAATAGCGGCCTGATTCATTTAACGGCAATCTCGGGGTTACATATTGGGATGGCGTTTGGGGTGGGGTATGTGTTTGGGT
TGTTATTAATTCGAATACTTACGGGGCGGCTGTGGCTGCCTTTTGTACTCGGAGGGGGGCTGGCATTGGCTTATGCTTGG
CTTGCTGGGTTTACGTTGCCCACTCAACGTGCATTAATTATGTGTTGGTTAAACATAGTGCTGCTATTACTCAATGTTCG
AGTCACCGCAATACAGCGAATATTACTGACCTTGTCTGCCGTGGCACTGTGGGATCCATTTACGGCTCTTTCGGCGAGTT
TTTGGTTATCTTTTCTCGCAGTGGGTTTGGTGATTTATCAAATATCGACCATCAACCCACAATTCGTTTGGTGGAAAAAA
CTCCTTTTGGGGCAGTTTCGTTTGTCAATATTAATGGTTCCAATGAGCGCTTATTTCTTTGCTGGCGTTAGCTTATCTTC
GGTTCTCTATAACATATTATTCATTCCGTGGTTCAGTTTTGTGGTGATTCCACTGCTATTTATGGCCTTAATTTGCTACC
TATTATTTCAGTATGAATCCTCTTGGTGGTGGGAATGGCTAGAGAGCGCTTTATGGCCGTTCAATGTGTCATTGGGTTTA
TCGTCGCCGAGTTGGATTGATGCTAGCTTATCCTCTCAATATTTTTTGCTGATGATACTGACGCTATGGTTTCTTAGGCC
AATGTTATCGAAGAGCGCTGGGATTGCGATAACGATGATTGTGGCAATGGGATGGGTCAGCTTTCCTGATAAACAAGGCT
GGCGAGTAGATGTGTTGGATGTTGGACATGGTTTGGCTGTACTCATTGAACGAAACGGTGCTTTTGTTTTGTATGACACA
GGCAGTGGCTGGGAAGGTGGTAGCTATGCTCAATCATTGATAGCCCCTCTGCTTATTCATCGAGGATATAGCCATCTTGA
TGGTGTGATCATTAGCCACTTTGATAATGATCATTCAGGGGGCTTGTATGACATTCAGCGGTTACTTTCTCCGACTTGGA
TTCGCGCTAGTCAGCATAAGCCTAGTATTCAACCTTGCAAACAAGGTGAGCAGTGGCAGTGGCAAGGGTTAACTTTTACT
GCGCTCTGGCCTCCGCAGCTCGTTTCTCGGGCAGAAAATCCGCATTCTTGTGTGGTACGTATTGAAGACCCTGAATACGG
CCATTCTTTATTGTTGACTGGCGATGTAACCGCGGTGGGCGAGTGGTTATTGAGTCGAGAGGCTGAGATATTAGAAAGTG
ATGTTCTGCTCGTGCCACATCATGGTAGTCAAACCTCATCAACCCTTGCTTTCATCAAGACAGTGAATCCACAGATTGCA
TTAGCTTCTTTAGCAAAGGGGCATCGCTGGCGTTTACCTCATCCGGATGTGTTGTCTCGTTATCAAGATTTAGGGATCAA
CTGGTTAGATACTGGGGATATGGGGCAAATTTCTTTACTCTATCGAAAAGAAGATCGCCAGTTACAGACGCTTCGTCAGA
GAGGAATTCGGCCGTGGTATAGGCAGATGCTACGTAACGAGGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(461-641)

Competence protein (Competence)

(170-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

50.07

100

0.502
  comEC Vibrio campbellii strain DS40M4

42.157

100

0.425
  comEC Vibrio parahaemolyticus RIMD 2210633

42.017

100

0.423

Multiple sequence alignment