Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPX87_RS04865 Genome accession   NZ_CP046815
Coordinates   1030169..1030801 (+) Length   210 a.a.
NCBI ID   WP_004394497.1    Uniprot ID   A0A7X4XR47
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1025169..1035801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS04840 - 1025196..1027118 (+) 1923 WP_078926700.1 ABC transporter ATP-binding protein -
  GPX87_RS04845 - 1027115..1027594 (+) 480 WP_078926701.1 TIGR02444 family protein -
  GPX87_RS04850 - 1027676..1028650 (+) 975 WP_078926702.1 hydrolase -
  GPX87_RS04855 - 1028746..1028955 (+) 210 WP_078926703.1 YheU family protein -
  GPX87_RS04860 - 1029060..1029929 (+) 870 WP_078926704.1 phosphoribulokinase -
  GPX87_RS04865 crp 1030169..1030801 (+) 633 WP_004394497.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPX87_RS04870 - 1030868..1031662 (-) 795 WP_078926705.1 DUF1338 domain-containing protein -
  GPX87_RS04875 astD 1031699..1033162 (-) 1464 WP_078926706.1 succinylglutamate-semialdehyde dehydrogenase -
  GPX87_RS04880 astA 1033180..1034199 (-) 1020 WP_078926707.1 arginine N-succinyltransferase -
  GPX87_RS04885 - 1034294..1035505 (-) 1212 WP_078926708.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23651.45 Da        Isoelectric Point: 7.8388

>NTDB_id=408260 GPX87_RS04865 WP_004394497.1 1030169..1030801(+) (crp) [Vibrio cincinnatiensis strain 1398-82]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408260 GPX87_RS04865 WP_004394497.1 1030169..1030801(+) (crp) [Vibrio cincinnatiensis strain 1398-82]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCATGCGGGCGAGAAGGCTGAAACCTTGTACTACATTGTCAAAGGTTCTGTGGCTGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGAGACTTCATCGGCGAACTGGGCTTGTTTGAAGAAGAT
CAAGAGCGCACCGCTTGGGTTCGAGCGAAATCGCCTTGTGAAGTGGCAGAGATCTCATTTAAAAAATTCCGTCAACTTAT
TCAAGTTAACCCAGATATTCTCATGCGTTTGTCTGGCCAAATGGCCCGTCGTTTGCAAGTAACCAGCCAAAAAGTGGGAG
ACCTTGCTTTCCTAGACGTAACCGGCCGTATTGCACAAACGCTTCTCAACTTAGCAAAACAACCTGATGCAATGACTCAT
CCCGATGGGATGCAAATCAAAATCACTCGTCAGGAAATTGGTCAGATCGTGGGTTGTTCACGTGAAACCGTAGGCCGTAT
TTTGAAGATGCTTGAAGAGCAGAACTTGATTTCCGCACACGGTAAAACGATTGTGGTTTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4XR47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment