Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GPX87_RS01720 Genome accession   NZ_CP046815
Coordinates   369991..371355 (-) Length   454 a.a.
NCBI ID   WP_115174053.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 1398-82     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 364991..376355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX87_RS01680 - 365148..365564 (-) 417 WP_078924966.1 CBS domain-containing protein -
  GPX87_RS01685 moaE 365718..366167 (-) 450 WP_078924967.1 molybdopterin synthase catalytic subunit MoaE -
  GPX87_RS01690 moaD 366173..366418 (-) 246 WP_078924968.1 molybdopterin synthase sulfur carrier subunit -
  GPX87_RS01695 moaC 366415..366894 (-) 480 WP_078924969.1 cyclic pyranopterin monophosphate synthase MoaC -
  GPX87_RS01700 moaB 366905..367417 (-) 513 WP_078924970.1 molybdenum cofactor biosynthesis protein B -
  GPX87_RS01705 moaA 367470..368459 (-) 990 WP_078924990.1 GTP 3',8-cyclase MoaA -
  GPX87_RS01710 - 368763..369653 (+) 891 WP_078924971.1 YvcK family protein -
  GPX87_RS01715 luxU 369646..369984 (-) 339 WP_078924991.1 quorum-sensing phosphorelay protein LuxU -
  GPX87_RS01720 luxO 369991..371355 (-) 1365 WP_115174053.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GPX87_RS01725 uvrB 371686..373716 (-) 2031 WP_078924973.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50579.85 Da        Isoelectric Point: 6.1974

>NTDB_id=408254 GPX87_RS01720 WP_115174053.1 369991..371355(-) (luxO) [Vibrio cincinnatiensis strain 1398-82]
MVEDTASVAALYRSYLTPLEIDITIVGTGRAAIESLNRRKPDLILLDLRLPDMTGMDVLHAVKERSADVPIIFMTAHGSI
DTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKLKNNPSHSTNSNYQGFIGSSQTMQAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGEKPFIAINCAAIPKDLIESELFGHVKGAFTGAAVDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMHSVDVRFVCATNRDPWKEVQAGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
HMSKEEGKEFVRLSPEVIERFKHYEWPGNVRQLQNVLRNVVVLNNGQEITLPMLPPPLNLPRIQERSVAPQPVDTGLSVH
DIFPLWMTEKQAIEKAIEACDGNIPRAASYLDVSPSTIYRKLQAWNEKEQEKEQ

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=408254 GPX87_RS01720 WP_115174053.1 369991..371355(-) (luxO) [Vibrio cincinnatiensis strain 1398-82]
ATGGTGGAGGATACCGCTTCGGTTGCGGCGTTGTATCGTTCTTATCTCACTCCATTAGAGATTGATATTACCATTGTTGG
AACAGGACGCGCTGCGATTGAAAGCCTTAATCGACGAAAACCCGACTTAATCTTATTGGATTTACGTCTGCCAGATATGA
CGGGTATGGATGTCTTGCATGCGGTTAAAGAACGTTCAGCGGACGTTCCTATCATTTTTATGACGGCTCACGGTTCTATT
GATACCGCCGTCGAAGCCATGCGGTATGGTGCACAGGATTTTTTAATTAAACCTTGTGAAGCGGATCGTCTGCGAGTTAC
CGTGAATAATGCGATACGCAAAGCCTCCAAATTAAAAAATAACCCCAGTCATTCAACCAATTCTAACTATCAAGGCTTTA
TTGGTAGTAGTCAGACGATGCAAGCGGTTTATCGAACGATTGATTCTGCTGCCAGCAGTAAAGCGAGCATATTTATTACA
GGGGAAAGTGGCACAGGAAAAGAAGTATGTGCAGAAGCCATTCATGCGGCCAGTAAACGAGGCGAGAAACCTTTTATTGC
GATCAACTGCGCGGCGATTCCCAAAGATTTGATTGAAAGTGAATTGTTCGGTCATGTGAAAGGAGCCTTTACAGGCGCGG
CCGTGGATAGGCAAGGGGCTGCTGAGCTAGCCGATGGGGGGACTCTGTTTTTAGATGAATTGTGCGAAATGGATTTGGAT
TTACAAACCAAATTGTTGCGCTTTATTCAAACCGGAACCTTTCAAAAAGTGGGTTCATCAAAAATGCACAGTGTGGATGT
TCGCTTTGTCTGTGCGACTAACCGCGACCCATGGAAAGAAGTACAAGCAGGGCGGTTTCGTGAAGATTTGTACTACCGGT
TGTATGTGATTCCTCTCCATTTACCGCCATTAAGAGAGCGGGGAGAAGATGTGATTGAAATTGCTTACTCGCTGCTGGGA
CATATGTCTAAAGAAGAAGGAAAAGAATTTGTTCGTCTTTCGCCAGAAGTGATAGAGCGTTTTAAACATTATGAGTGGCC
GGGAAATGTGCGCCAATTGCAGAATGTGTTACGCAATGTGGTGGTGCTTAATAATGGGCAGGAGATTACTTTGCCTATGC
TGCCGCCGCCTTTAAATTTACCTCGAATTCAAGAGCGTTCGGTTGCTCCTCAGCCAGTGGATACTGGGCTTTCTGTGCAT
GACATCTTTCCGTTATGGATGACAGAAAAGCAGGCCATAGAAAAAGCCATCGAAGCGTGTGATGGCAACATCCCACGAGC
AGCCAGCTATTTAGACGTTAGCCCTTCAACCATCTATCGCAAGTTACAAGCATGGAATGAGAAAGAACAAGAGAAGGAGC
AATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.444

98.238

0.859
  pilR Pseudomonas aeruginosa PAK

38.876

98.018

0.381
  pilR Acinetobacter baumannii strain A118

35.608

100

0.368

Multiple sequence alignment