Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   METIG_RS05695 Genome accession   NC_015562
Coordinates   1137091..1137978 (+) Length   295 a.a.
NCBI ID   WP_013799276.1    Uniprot ID   F6BDW4
Organism   Methanotorris igneus Kol 5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1132091..1142978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METIG_RS09295 - 1132510..1132698 (-) 189 WP_172632597.1 hypothetical protein -
  METIG_RS05685 (Metig_1134) - 1133612..1136011 (+) 2400 WP_013799274.1 ATPase, T2SS/T4P/T4SS family -
  METIG_RS05690 (Metig_1135) epdK 1136037..1137086 (+) 1050 WP_013799275.1 type II secretion system F family protein Machinery gene
  METIG_RS05695 (Metig_1136) epdJ 1137091..1137978 (+) 888 WP_013799276.1 type II secretion system F family protein Machinery gene
  METIG_RS05700 (Metig_1137) - 1138060..1138560 (-) 501 WP_013799277.1 TIGR00295 family protein -
  METIG_RS05705 (Metig_1138) tfe 1138665..1139219 (-) 555 WP_013799278.1 transcription factor E -
  METIG_RS05710 (Metig_1139) - 1139206..1140312 (-) 1107 WP_013799279.1 ATP-grasp domain-containing protein -
  METIG_RS05715 (Metig_1140) mptA 1140506..1141438 (-) 933 WP_013799280.1 GTP cyclohydrolase MptA -
  METIG_RS05720 (Metig_1141) - 1141456..1142676 (-) 1221 WP_172632632.1 ArsR family transcriptional regulator -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32894.87 Da        Isoelectric Point: 10.0173

>NTDB_id=40815 METIG_RS05695 WP_013799276.1 1137091..1137978(+) (epdJ) [Methanotorris igneus Kol 5]
MSIINKIYIYFIKRNIRILRKIGKRVDERVFISLLLFVFAIPLVFSLFFNLTLKTAIILALVYLASALSIPTILYEIKIE
RFEQNLPKALYTMILALESGRSLTEAMEEVIKSGISEVDKVFARVMILMINQKMSFEDAMLVVASYLDSKVFRQLSRLLI
ENRKYGGDLANTLKILAKTLEDFQNLRRQLLSVTANGLAVGLVILCGVIPATAALIGGYLIIVSKIAPQMPSVTQDQIAK
CVEIIQTGTGIFGLLFAIPLYGLKLGRMILMCAICMTMGIIAFYGTLKLTGMLFS

Nucleotide


Download         Length: 888 bp        

>NTDB_id=40815 METIG_RS05695 WP_013799276.1 1137091..1137978(+) (epdJ) [Methanotorris igneus Kol 5]
ATGTCAATCATAAACAAAATATATATTTATTTTATAAAACGGAACATTAGAATACTGCGAAAAATTGGAAAACGCGTTGA
TGAAAGGGTATTTATATCGTTATTATTGTTTGTATTTGCAATTCCATTAGTATTTAGTTTATTTTTTAATTTAACATTAA
AAACAGCAATAATATTGGCATTAGTATATCTTGCATCCGCATTATCCATTCCAACAATCCTCTATGAAATAAAGATTGAA
AGGTTTGAACAAAACTTACCAAAGGCTTTATATACAATGATTCTTGCCTTAGAGTCAGGAAGGTCATTAACTGAAGCTAT
GGAAGAGGTTATTAAAAGTGGTATTAGTGAGGTTGATAAGGTTTTTGCCAGAGTTATGATATTAATGATTAACCAAAAAA
TGAGTTTTGAAGATGCTATGCTGGTTGTTGCCAGTTATCTGGATTCAAAAGTATTCCGACAGCTTTCAAGATTATTAATA
GAAAACAGAAAATATGGTGGGGATTTAGCAAACACACTAAAAATATTGGCTAAAACCTTAGAGGACTTTCAAAATTTAAG
AAGGCAGTTGTTAAGTGTCACTGCAAATGGTCTTGCCGTGGGTTTAGTTATATTATGTGGGGTTATACCAGCAACGGCAG
CCTTGATTGGGGGGTATTTAATAATCGTCTCAAAAATAGCTCCACAAATGCCATCAGTAACTCAGGATCAAATAGCAAAA
TGCGTTGAAATAATCCAAACTGGAACTGGAATATTTGGGTTATTATTTGCTATACCACTATATGGTCTTAAGTTGGGTAG
GATGATTTTAATGTGTGCTATATGTATGACCATGGGTATTATAGCATTTTATGGCACGTTAAAACTTACAGGGATGTTAT
TCAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(90-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6BDW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanococcus maripaludis strain DSM 2067

60.616

98.983

0.6

Multiple sequence alignment