Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   METIG_RS05690 Genome accession   NC_015562
Coordinates   1136037..1137086 (+) Length   349 a.a.
NCBI ID   WP_013799275.1    Uniprot ID   F6BDW3
Organism   Methanotorris igneus Kol 5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131037..1142086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  METIG_RS05675 (Metig_1132) - 1131120..1131377 (+) 258 WP_013799272.1 Gar1/Naf1 family protein -
  METIG_RS05680 (Metig_1133) - 1131403..1132434 (+) 1032 WP_013799273.1 transcription initiation factor IIB -
  METIG_RS09295 - 1132510..1132698 (-) 189 WP_172632597.1 hypothetical protein -
  METIG_RS05685 (Metig_1134) - 1133612..1136011 (+) 2400 WP_013799274.1 ATPase, T2SS/T4P/T4SS family -
  METIG_RS05690 (Metig_1135) epdK 1136037..1137086 (+) 1050 WP_013799275.1 type II secretion system F family protein Machinery gene
  METIG_RS05695 (Metig_1136) epdJ 1137091..1137978 (+) 888 WP_013799276.1 type II secretion system F family protein Machinery gene
  METIG_RS05700 (Metig_1137) - 1138060..1138560 (-) 501 WP_013799277.1 TIGR00295 family protein -
  METIG_RS05705 (Metig_1138) tfe 1138665..1139219 (-) 555 WP_013799278.1 transcription factor E -
  METIG_RS05710 (Metig_1139) - 1139206..1140312 (-) 1107 WP_013799279.1 ATP-grasp domain-containing protein -
  METIG_RS05715 (Metig_1140) mptA 1140506..1141438 (-) 933 WP_013799280.1 GTP cyclohydrolase MptA -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39680.90 Da        Isoelectric Point: 9.4757

>NTDB_id=40814 METIG_RS05690 WP_013799275.1 1136037..1137086(+) (epdK) [Methanotorris igneus Kol 5]
MVEISVENIKKFFKKISKRIDDFLIKIGLKRKRIRFRTAWEEYLRRMSSGEEALTFYEPFIEDTPMDVRDIDDLFGDDLG
IFEKYSKSLSYWITHTSFLPSKRDFQYIGISDEKKYFAKVLLASLGTFILLFLYGAILNNNPISGILNGFIFAGGLMIAG
IFYPKLKLILFRGEIKIQILFALLYMVSVVRVGISLQEAIENVAKSPEYGIVSYEFKAIIHDVNVGGYNFVEALERAKMR
TKIPLMEKLYDQLLVAFNKGNVSLLLEKLYEDIVRQSLAKIDSSKFMISNLGNLVFGVGLILPFAGMIQSALGSQQGFPG
IIDTVDLILTKIGPISTIIFTIFIKMKIE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=40814 METIG_RS05690 WP_013799275.1 1136037..1137086(+) (epdK) [Methanotorris igneus Kol 5]
ATGGTAGAAATTTCTGTGGAAAACATAAAAAAATTTTTTAAGAAAATTTCAAAACGCATAGATGATTTTTTAATTAAAAT
AGGGCTAAAAAGGAAAAGAATAAGATTCCGTACTGCTTGGGAAGAATATCTCAGAAGAATGTCAAGTGGTGAAGAGGCAC
TTACATTTTACGAACCATTCATAGAAGATACCCCCATGGATGTCAGAGATATTGATGATTTATTTGGTGATGATTTAGGG
ATTTTTGAGAAATATTCAAAATCACTCTCATATTGGATAACCCACACGTCATTTTTACCATCAAAAAGAGATTTTCAATA
TATAGGTATAAGTGATGAGAAAAAATATTTCGCTAAGGTGTTATTAGCAAGTCTTGGAACATTCATTCTTTTGTTTTTAT
ATGGGGCTATTTTGAACAATAATCCAATTTCAGGTATCTTAAATGGTTTCATCTTCGCTGGAGGTTTAATGATAGCCGGT
ATTTTCTACCCCAAATTAAAATTAATATTATTTAGAGGAGAAATAAAAATTCAAATATTATTTGCATTGTTGTATATGGT
ATCTGTTGTTAGGGTAGGAATATCACTTCAGGAAGCTATAGAAAACGTTGCAAAAAGTCCAGAATATGGAATAGTATCTT
ATGAATTCAAAGCAATAATTCATGACGTAAATGTTGGTGGATATAACTTTGTAGAGGCACTGGAAAGGGCAAAAATGAGA
ACTAAAATACCACTTATGGAAAAATTGTATGATCAGCTCTTAGTGGCTTTTAATAAAGGTAATGTTTCTCTATTGTTGGA
GAAGTTGTATGAGGATATTGTTAGACAATCTTTGGCAAAAATAGATTCATCAAAATTTATGATATCAAATTTAGGAAATC
TTGTTTTTGGTGTTGGGTTGATTTTACCATTTGCTGGTATGATACAGTCAGCACTTGGTAGTCAGCAAGGATTTCCCGGA
ATAATAGATACAGTTGATCTCATACTAACAAAAATAGGTCCAATCTCAACAATAATTTTCACGATATTTATTAAAATGAA
GATTGAGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(183-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F6BDW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanococcus maripaludis strain DSM 2067

57.012

93.983

0.536

Multiple sequence alignment