Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H0N29_RS14430 Genome accession   NZ_CP059040
Coordinates   3037209..3037412 (-) Length   67 a.a.
NCBI ID   WP_001984265.1    Uniprot ID   A0ABX6CCU5
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3032209..3042412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N29_RS14410 (H0N29_14400) - 3033705..3034280 (-) 576 WP_000067109.1 hypothetical protein -
  H0N29_RS14415 (H0N29_14405) - 3034425..3034613 (-) 189 WP_000642900.1 hypothetical protein -
  H0N29_RS14420 (H0N29_14410) - 3034613..3035287 (-) 675 WP_000560650.1 DUF3800 domain-containing protein -
  H0N29_RS14425 (H0N29_14415) - 3035630..3037072 (-) 1443 WP_000003532.1 hypothetical protein -
  H0N29_RS14430 (H0N29_14420) ssb 3037209..3037412 (-) 204 WP_001984265.1 single-stranded DNA-binding protein Machinery gene
  H0N29_RS14435 (H0N29_14425) - 3037736..3040201 (-) 2466 WP_001022433.1 DUF927 domain-containing protein -
  H0N29_RS14440 (H0N29_14430) - 3040213..3040491 (-) 279 WP_001064706.1 hypothetical protein -
  H0N29_RS14445 (H0N29_14435) - 3040606..3040917 (-) 312 WP_000787400.1 hypothetical protein -
  H0N29_RS14450 (H0N29_14440) - 3040927..3041295 (-) 369 WP_001046480.1 hypothetical protein -
  H0N29_RS14455 (H0N29_14445) - 3041288..3041842 (-) 555 WP_000991775.1 Bro-N domain-containing protein -
  H0N29_RS14460 (H0N29_14450) - 3041839..3042048 (-) 210 WP_001016479.1 helix-turn-helix domain-containing protein -
  H0N29_RS14465 (H0N29_14455) - 3042051..3042266 (-) 216 WP_000153154.1 hypothetical protein -

Sequence

Protein


Download         Length: 67 a.a.        Molecular weight: 7488.51 Da        Isoelectric Point: 9.2521

>NTDB_id=408128 H0N29_RS14430 WP_001984265.1 3037209..3037412(-) (ssb) [Acinetobacter baumannii strain ATCC 19606]
MPNVKKVTVMGVLGLNPETKQFSNGGSVTTFSVATTEFWKDKTTGERKEANSINLYQQSFKECCQRP

Nucleotide


Download         Length: 204 bp        

>NTDB_id=408128 H0N29_RS14430 WP_001984265.1 3037209..3037412(-) (ssb) [Acinetobacter baumannii strain ATCC 19606]
ATGCCAAACGTAAAGAAAGTTACTGTCATGGGTGTGTTAGGTCTTAACCCTGAAACTAAACAATTTTCCAACGGTGGCAG
CGTTACGACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACCACAGGTGAGCGTAAAGAGGCTAATAGCATAA
ATCTGTATCAACAATCGTTTAAAGAGTGTTGCCAAAGGCCGTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.02

73.134

0.373

Multiple sequence alignment