Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPY47_RS17280 Genome accession   NZ_CP046806
Coordinates   1945254..1945886 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio alginolyticus strain 2439-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1940254..1950886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY47_RS17255 - 1940273..1942192 (+) 1920 WP_042523641.1 ABC transporter ATP-binding protein -
  GPY47_RS17260 - 1942189..1942677 (+) 489 WP_033907158.1 TIGR02444 family protein -
  GPY47_RS17265 - 1942765..1943772 (+) 1008 WP_086047073.1 hydrolase -
  GPY47_RS17270 - 1943806..1944018 (+) 213 WP_005381436.1 YheU family protein -
  GPY47_RS17275 - 1944144..1945013 (+) 870 WP_086047074.1 phosphoribulokinase -
  GPY47_RS17280 crp 1945254..1945886 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPY47_RS17285 - 1946031..1946822 (-) 792 WP_042523639.1 DUF1338 domain-containing protein -
  GPY47_RS17290 astD 1947071..1948528 (-) 1458 WP_005381424.1 succinylglutamate-semialdehyde dehydrogenase -
  GPY47_RS17295 astA 1948557..1949576 (-) 1020 WP_005381422.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=408109 GPY47_RS17280 WP_005381432.1 1945254..1945886(+) (crp) [Vibrio alginolyticus strain 2439-01]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408109 GPY47_RS17280 WP_005381432.1 1945254..1945886(+) (crp) [Vibrio alginolyticus strain 2439-01]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGCACGCTAATTCACGCGGGCGAAAAGGCAGAAACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTACAAGTAACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment