Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPX92_RS17335 Genome accession   NZ_CP046802
Coordinates   2770465..2772594 (-) Length   709 a.a.
NCBI ID   WP_238843306.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2765465..2777594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS17315 kdsB 2766764..2767513 (-) 750 WP_078926283.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPX92_RS17320 - 2767513..2767692 (-) 180 WP_078926282.1 Trm112 family protein -
  GPX92_RS17325 lpxK 2767673..2768680 (-) 1008 WP_078926281.1 tetraacyldisaccharide 4'-kinase -
  GPX92_RS17330 msbA 2768684..2770432 (-) 1749 WP_154115773.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPX92_RS17335 comEC 2770465..2772594 (-) 2130 WP_238843306.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPX92_RS17340 - 2772717..2773232 (+) 516 WP_078926278.1 DUF2062 domain-containing protein -
  GPX92_RS17345 - 2773482..2774102 (+) 621 WP_078926308.1 NAD(P)H-dependent oxidoreductase -
  GPX92_RS17350 - 2774099..2776021 (+) 1923 WP_158117419.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GPX92_RS17355 lolE 2776098..2777336 (-) 1239 WP_078926276.1 lipoprotein-releasing ABC transporter permease subunit LolE -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 80047.49 Da        Isoelectric Point: 8.8044

>NTDB_id=408075 GPX92_RS17335 WP_238843306.1 2770465..2772594(-) (comEC) [Vibrio cincinnatiensis strain 2070-81]
MSMMLFMNRCRGCIGVALALVVIITQGNLVRAQSNIILQFEGDITIKGEVNSFFNATSHGFVGSAVIRSINHQPLPFFLT
PKIHLTTPIALQLGDQFEFIAQVKPIYGRLNEVGFDQESFYFSQRWVARANVKKNSTYQIIPNSHLRSKLYSHIKQLTEL
SPVQGMILALTFGERSLITAEQWLGLRNSGLIHLTAISGLHIGMAFGVGYVFGLLLIRILTGRLWLPFVLGGGLALAYAW
LAGFTLPTQRALIMCWLNIVLLLLNVRVTAIQRILLTLSAVALWDPFTALSASFWLSFLAVGLVIYQISTINPQFVWWKK
LLLGQFRLSILMVPMSAYFFAGVSLSSVLYNILFIPWFSFVVIPLLFMALICYLLFQYESSWWWEWLESALWPFNVSLGL
SSPSWIDASLSSQYFLLMILTLWFLRPMLSKSAGIAITMIVAMGWVSFPDKQGWRVDVLDVGHGLAVLIERNGAFVLYDT
GSGWEGGSYAQSLIAPLLIHRGYSHLDGVIISHFDNDHSGGLYDIQRLLSPTWIRASQHKPSIQPCKQGEQWQWQGLTFT
ALWPPQLVSRAENPHSCVVRIEDPEYGHSLLLTGDVTAVGEWLLSREAEILESDVLLVPHHGSQTSSTLAFIKTVNPQIA
LASLAKGHRWRLPHPDVLSRYQDLGINWLDTGDMGQISLLYRKEDRQLQTLRQRGIRPWYRQMLRNEVE

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=408075 GPX92_RS17335 WP_238843306.1 2770465..2772594(-) (comEC) [Vibrio cincinnatiensis strain 2070-81]
ATGAGTATGATGTTATTCATGAACCGTTGCAGGGGATGCATCGGGGTCGCTCTGGCTTTGGTGGTAATAATAACACAAGG
AAACTTGGTGAGAGCACAGTCCAATATAATCTTACAATTTGAGGGCGATATTACCATAAAAGGAGAGGTTAACAGCTTTT
TTAACGCAACTTCACACGGTTTTGTTGGTTCGGCGGTTATTCGTTCAATTAATCATCAGCCTTTACCCTTTTTTCTAACA
CCTAAGATACATTTAACGACGCCTATCGCATTACAGCTGGGGGATCAATTTGAGTTTATTGCGCAAGTGAAACCCATTTA
TGGACGGTTAAATGAAGTTGGGTTTGATCAGGAGTCTTTTTACTTTAGCCAGCGTTGGGTTGCCCGTGCGAATGTTAAAA
AAAATTCAACCTATCAAATTATTCCCAATAGCCATTTACGTTCAAAGCTCTATTCCCATATTAAACAGCTCACAGAGTTG
AGCCCAGTACAAGGTATGATACTTGCCCTGACTTTTGGTGAGCGCAGTTTGATTACCGCTGAGCAGTGGTTAGGGCTGCG
TAATAGCGGCCTGATTCATTTAACGGCAATCTCGGGGTTACATATTGGGATGGCGTTTGGGGTGGGGTATGTGTTTGGGT
TGTTATTAATTCGAATACTTACGGGGCGGCTGTGGCTGCCTTTTGTACTCGGAGGGGGGCTGGCATTGGCTTATGCTTGG
CTTGCTGGGTTTACGTTGCCCACTCAACGTGCATTAATTATGTGTTGGTTAAACATAGTGCTGCTATTACTCAATGTTCG
AGTCACCGCAATACAGCGAATATTACTGACCTTGTCTGCCGTGGCACTGTGGGATCCATTTACGGCTCTTTCGGCGAGTT
TTTGGTTATCTTTTCTCGCAGTGGGTTTGGTGATTTATCAAATATCGACCATCAACCCACAATTCGTTTGGTGGAAAAAA
CTCCTTTTGGGGCAGTTTCGTTTGTCAATCTTAATGGTTCCAATGAGCGCTTATTTCTTTGCTGGCGTTAGCTTATCTTC
GGTTCTCTATAACATATTATTCATTCCGTGGTTCAGTTTTGTGGTGATTCCACTGCTATTTATGGCCTTAATTTGCTACC
TATTATTTCAGTATGAATCCTCTTGGTGGTGGGAATGGCTAGAGAGCGCTTTGTGGCCGTTCAATGTGTCATTGGGTTTA
TCGTCGCCGAGTTGGATTGATGCTAGCTTATCCTCTCAATATTTTTTGCTGATGATACTGACGCTATGGTTTCTTAGGCC
AATGTTATCGAAGAGCGCTGGGATTGCGATAACGATGATTGTGGCAATGGGATGGGTCAGCTTTCCTGATAAACAAGGCT
GGCGAGTAGATGTGTTGGATGTTGGACATGGTTTGGCTGTACTCATTGAACGAAACGGTGCTTTTGTTTTGTATGACACA
GGCAGTGGCTGGGAAGGTGGTAGCTATGCTCAATCATTGATAGCCCCTCTGCTTATTCATCGAGGATATAGCCATCTTGA
TGGTGTGATCATTAGCCACTTTGATAATGATCATTCAGGGGGCTTGTATGACATTCAGCGGTTACTTTCTCCGACTTGGA
TTCGCGCTAGTCAGCATAAGCCTAGTATTCAACCTTGCAAACAAGGTGAGCAGTGGCAGTGGCAAGGGTTAACTTTTACT
GCGCTCTGGCCTCCGCAGCTCGTTTCTCGGGCAGAAAATCCGCATTCTTGTGTGGTACGTATTGAAGACCCTGAATACGG
CCATTCTTTATTGTTGACTGGCGATGTAACCGCGGTGGGCGAGTGGTTATTGAGTCGAGAGGCTGAGATATTAGAAAGTG
ATGTTCTGCTCGTGCCACATCATGGTAGTCAAACCTCATCAACCCTTGCTTTCATCAAGACAGTGAATCCACAGATTGCA
TTAGCTTCTTTAGCAAAGGGGCATCGCTGGCGTTTACCTCATCCGGATGTGTTGTCTCGTTATCAAGATTTAGGGATCAA
CTGGTTAGATACTGGGGATATGGGGCAAATTTCTTTACTCTATCGAAAAGAAGATCGCCAGTTACAGACGCTTCGTCAGA
GAGGAATTCGGCCGTGGTATAGGCAGATGCTACGTAACGAGGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(461-641)

Competence protein (Competence)

(170-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

50.07

100

0.502
  comEC Vibrio campbellii strain DS40M4

42.157

100

0.425
  comEC Vibrio parahaemolyticus RIMD 2210633

42.017

100

0.423

Multiple sequence alignment