Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPX92_RS10215 Genome accession   NZ_CP046802
Coordinates   1267531..1268163 (-) Length   210 a.a.
NCBI ID   WP_004394497.1    Uniprot ID   A0A7X4XR47
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262531..1273163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS10195 - 1262827..1264038 (+) 1212 WP_078926708.1 aspartate aminotransferase family protein -
  GPX92_RS10200 astA 1264133..1265152 (+) 1020 WP_158117086.1 arginine N-succinyltransferase -
  GPX92_RS10205 astD 1265170..1266633 (+) 1464 WP_078926706.1 succinylglutamate-semialdehyde dehydrogenase -
  GPX92_RS10210 - 1266670..1267464 (+) 795 WP_158117087.1 DUF1338 domain-containing protein -
  GPX92_RS10215 crp 1267531..1268163 (-) 633 WP_004394497.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPX92_RS10220 - 1268403..1269272 (-) 870 WP_078926704.1 phosphoribulokinase -
  GPX92_RS10225 - 1269377..1269586 (-) 210 WP_078926703.1 YheU family protein -
  GPX92_RS10230 - 1269682..1270656 (-) 975 WP_158117088.1 hydrolase -
  GPX92_RS10235 - 1270738..1271217 (-) 480 WP_158117089.1 TIGR02444 family protein -
  GPX92_RS10240 - 1271214..1273136 (-) 1923 WP_158117090.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23651.45 Da        Isoelectric Point: 7.8388

>NTDB_id=408062 GPX92_RS10215 WP_004394497.1 1267531..1268163(-) (crp) [Vibrio cincinnatiensis strain 2070-81]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=408062 GPX92_RS10215 WP_004394497.1 1267531..1268163(-) (crp) [Vibrio cincinnatiensis strain 2070-81]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCATGCGGGCGAGAAGGCTGAAACCTTGTACTACATTGTCAAAGGTTCTGTGGCTGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGAGACTTCATCGGCGAACTGGGCTTGTTTGAAGAAGAT
CAAGAGCGCACCGCTTGGGTTCGAGCGAAATCGCCTTGTGAAGTGGCGGAGATCTCATTTAAAAAATTCCGTCAACTTAT
TCAAGTTAACCCAGATATTCTCATGCGTTTGTCTGGCCAAATGGCCCGTCGTTTGCAAGTAACCAGCCAAAAAGTGGGAG
ACCTTGCTTTCCTAGACGTAACCGGCCGTATTGCACAAACGCTTCTCAACTTAGCAAAACAACCTGATGCAATGACTCAT
CCCGATGGGATGCAAATCAAAATCACTCGTCAGGAAATTGGTCAGATCGTGGGTTGTTCACGTGAAACCGTAGGCCGTAT
TTTGAAGATGCTTGAAGAGCAGAACTTGATTTCCGCACACGGTAAAACGATTGTGGTTTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4XR47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment