Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPX92_RS07230 Genome accession   NZ_CP046802
Coordinates   619831..620481 (+) Length   216 a.a.
NCBI ID   WP_078926475.1    Uniprot ID   A0A1T4QER8
Organism   Vibrio cincinnatiensis strain 2070-81     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 614831..625481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX92_RS07215 - 615394..616839 (-) 1446 WP_078926478.1 MSHA biogenesis protein MshI -
  GPX92_RS07220 csrD 616846..618840 (-) 1995 WP_078926477.1 RNase E specificity factor CsrD -
  GPX92_RS07225 ssb 619020..619544 (-) 525 WP_078926476.1 single-stranded DNA-binding protein Machinery gene
  GPX92_RS07230 qstR 619831..620481 (+) 651 WP_078926475.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPX92_RS07235 galU 620722..621591 (+) 870 WP_078926474.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPX92_RS07240 uvrA 621726..624551 (+) 2826 WP_078926473.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25166.13 Da        Isoelectric Point: 9.9102

>NTDB_id=408049 GPX92_RS07230 WP_078926475.1 619831..620481(+) (qstR) [Vibrio cincinnatiensis strain 2070-81]
MPRSNYTRTIYYLTLDEKAATPKILSQAIEQLAIPIPKIEPEQLVNLYQHSKHKILLFDFQEHEQIRQRLAPLKLTSSHL
EIILFNVDKRLHTDTLLSFGHLKGVFYQTETSANLTNGLAEIINGQNWLPRHVSNQLLHYYRYIFQEHQIKATINLTARE
LQILRCLQTGASNMLIAESLFISEFTVKSHLYQIFKKISVKNRTQAIAWANQRILS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=408049 GPX92_RS07230 WP_078926475.1 619831..620481(+) (qstR) [Vibrio cincinnatiensis strain 2070-81]
ATGCCAAGATCAAATTATACAAGAACCATCTACTACCTTACTTTAGATGAGAAAGCCGCTACCCCAAAAATTCTCAGTCA
AGCAATAGAACAACTTGCTATCCCTATTCCAAAAATTGAACCAGAACAACTCGTCAATCTTTATCAGCACTCAAAACACA
AAATTTTACTCTTTGATTTTCAGGAACACGAACAAATTCGGCAACGTCTTGCCCCCTTAAAACTAACGAGTTCACATCTG
GAAATCATTCTATTTAATGTAGATAAACGTTTACATACAGATACGTTGTTAAGTTTTGGCCATCTGAAAGGCGTTTTTTA
TCAAACAGAAACGTCAGCTAACTTAACAAATGGGCTAGCAGAAATTATCAATGGGCAAAATTGGTTGCCACGCCATGTCT
CTAACCAATTGTTACACTATTACCGTTACATTTTTCAAGAGCATCAAATTAAAGCAACGATTAATCTAACCGCAAGAGAA
CTTCAGATTTTACGCTGCTTACAAACAGGAGCCTCCAATATGCTCATTGCAGAAAGCTTATTCATTAGCGAATTTACGGT
AAAATCCCACCTATACCAAATATTTAAGAAAATATCGGTTAAAAACCGAACCCAAGCAATTGCGTGGGCTAATCAACGTA
TCTTGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T4QER8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

67.907

99.537

0.676
  qstR Vibrio campbellii strain DS40M4

51.152

100

0.514
  qstR Vibrio parahaemolyticus RIMD 2210633

50.691

100

0.509

Multiple sequence alignment