Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY18_RS10140 Genome accession   NZ_CP046800
Coordinates   684434..686671 (-) Length   745 a.a.
NCBI ID   WP_158146721.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2012V-1235     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 679434..691671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS10120 kdsB 680739..681482 (-) 744 WP_154184588.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPY18_RS10125 - 681482..681661 (-) 180 WP_020327784.1 Trm112 family protein -
  GPY18_RS10130 lpxK 681642..682649 (-) 1008 WP_158146720.1 tetraacyldisaccharide 4'-kinase -
  GPY18_RS10135 msbA 682653..684401 (-) 1749 WP_047456910.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY18_RS10140 comEC 684434..686671 (-) 2238 WP_158146721.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY18_RS10145 - 686680..687210 (+) 531 WP_020327788.1 DUF2062 domain-containing protein -
  GPY18_RS10150 lolE 687343..688587 (-) 1245 WP_158146722.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY18_RS10155 lolD 688588..689274 (-) 687 WP_158146723.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY18_RS10160 lolC 689267..690475 (-) 1209 WP_055453396.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPY18_RS10165 - 690651..691220 (+) 570 WP_158146724.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83492.82 Da        Isoelectric Point: 8.6929

>NTDB_id=407994 GPY18_RS10140 WP_158146721.1 684434..686671(-) (comEC) [Vibrio fluvialis strain 2012V-1235]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMITLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQELRTFWQPKVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNFRSMLHRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHI
GMAFAIGYLIGSAMMRLHVSLLWMPFVSGMCIAAIYAWLAGFTLPTQRALLMCGLNVALTMSGVRVTAVQRILITLAVVL
IVTPFAPLSNSFWLSFLAVALVLYQLADRTTRHGWRKWLTVQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLALFLTTFAGDITWLWRGIDLSFWPLQRALEWAGSSWIAVSQTATVVFSVGLLLWICRPILSWRAQLYAGIALLGF
GFFTPQDERWRVDILDVGHGLAVLIERNHNALLYDTGSGWPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKD
AETLLSPKWVVASQSGPNWQACHTGEQWEWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIASLAKGNQWQLPHRSVVARYVDAGSDWLDTGEAGQITLTYQAQ
SRQLSTLRQIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=407994 GPY18_RS10140 WP_158146721.1 684434..686671(-) (comEC) [Vibrio fluvialis strain 2012V-1235]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCCCTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGATCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATCAATGGACAAGAATTGCGCACTTTTTGGCAGCCGAAGGTACGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTC
AGTCAGGGTTGGGTTGCGAGAGTGAACGTTAAACCTCAGTCAAAATTTGAGGTCGTTTCAACGCCTAATTTTCGCAGTAT
GTTGCACCGCCAAATCAAAACATGGACGCAAAACAGCCCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCA
ACGGCATTCATGAAGCTGAATGGCGCTCACTGAGAAATAGCGGACTCATCCATCTGGTGGCAATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAAGTGCGATGATGCGGCTGCATGTCAGTTTGCTGTGGATGCCTTTCGT
TTCCGGGATGTGTATTGCCGCGATTTATGCATGGCTGGCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCG
GTCTCAACGTCGCTCTCACGATGAGTGGCGTGCGTGTTACGGCGGTGCAGCGAATCCTTATCACCCTTGCTGTGGTGTTA
ATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACACGTCATGGCTGGCGAAAATGGCTGACGGTGCAATGCTCGTTAGTCACTATGATGATTCCAGTTTCCG
CGTATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACTCTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTG
CCGCTGCTGTTTCTCGCACTGTTTCTCACTACCTTTGCCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTT
CTGGCCACTGCAGCGGGCACTGGAATGGGCGGGATCGAGCTGGATTGCTGTAAGTCAGACGGCGACGGTCGTATTTAGTG
TTGGCCTTCTCCTTTGGATTTGCCGCCCGATATTAAGCTGGCGAGCCCAACTCTATGCGGGAATTGCGTTACTTGGCTTT
GGCTTTTTTACCCCACAGGATGAGCGTTGGCGAGTTGACATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACG
GAATCACAACGCCCTGTTGTACGACACCGGCAGTGGCTGGCCTGAAGGCAGTTACGTTCGCTCTTTGATTGTTCCAATAC
TCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAATTCTCAGCCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGAGTCAGTCTGGTCCAAATTGGCAGGCTTGCCACACGGGAGAACA
GTGGGAATGGCAAGGACTGACGATGACGGCACTGTGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAACCCATGGATATTCAGAGCGATGTCATCATTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTT
TATCGAGCGGGTTTCCCCGCAAGTGGCCATCGCGTCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATGTGGATGCGGGGTCCGACTGGCTTGATACTGGCGAGGCGGGGCAAATCACTCTGACTTATCAAGCTCAA
TCCCGGCAGCTATCGACTCTGCGCCAAATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)

Domain of unknown function (DUF4131) (DUF4131)

(33-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.333

100

0.537
  comEC Vibrio parahaemolyticus RIMD 2210633

42.364

100

0.428
  comEC Vibrio campbellii strain DS40M4

41.402

100

0.42

Multiple sequence alignment